Volume 13; Issue 9

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Genome Biology
Volume 13; Issue 9

Genome Biology

Volume 13; Issue 9

1

Modeling gene expression using chromatin features in various cellular contexts

Xianjun Dong, Melissa C Greven, Anshul Kundaje, Sarah Djebali, James B Brown, Chao Cheng, Tom R Gingeras, Mark Gerstein, Roderic Guigó, Ewan Birney, Zhiping Weng

Journal:

Year:

2012

Language:

english

File:

PDF, 988 KB

english, 2012

2

Functional predictions from inference and observation in sequence-based inflammatory bowel disease research

Folker Meyer, William L Trimble, Eugene B Chang, Kim M Handley

Journal:

Year:

2012

Language:

english

File:

PDF, 96 KB

english, 2012

3

Evolutionary insights into genome-wide nucleosome positioning

Vijender Singh, Tom Owen-Hughes

Journal:

Year:

2012

Language:

english

File:

PDF, 158 KB

english, 2012

4

Why science and synchronized swimming should not be Olympic sports

Journal:

Year:

2012

Language:

english

File:

PDF, 97 KB

english, 2012

5

Human pigmentation genes under environmental selection

Richard A Sturm, David L Duffy

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Year:

2012

Language:

english

File:

PDF, 240 KB

english, 2012

6

The yeast factory

Daniela Delneri

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Year:

2012

Language:

english

File:

PDF, 97 KB

english, 2012

7

Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors

Kevin Y Yip, Chao Cheng, Nitin Bhardwaj, James B Brown, Jing Leng, Anshul Kundaje, Joel Rozowsky, Ewan Birney, Peter Bickel, Michael Snyder, Mark Gerstein

Journal:

Year:

2012

Language:

english

File:

PDF, 1.45 MB

english, 2012

8

Analysis of variation at transcription factor binding sites inDrosophilaand humans

Mikhail Spivakov, Junaid Akhtar, Pouya Kheradpour, Kathryn Beal, Charles Girardot, Gautier Koscielny, Javier Herrero, Manolis Kellis, Eileen EM Furlong, Ewan Birney

Journal:

Year:

2012

Language:

english

File:

PDF, 1.17 MB

english, 2012

9

Functional analysis of transcription factor binding sites in human promoters

Troy W Whitfield, Jie Wang, Patrick J Collins, E Christopher Partridge, Shelley Force Aldred, Nathan D Trinklein, Richard M Myers, Zhiping Weng

Journal:

Year:

2012

Language:

english

File:

PDF, 869 KB

english, 2012

10

The GENCODE pseudogene resource

Baikang Pei, Cristina Sisu, Adam Frankish, Cédric Howald, Lukas Habegger, Xinmeng Jasmine Mu, Rachel Harte, Suganthi Balasubramanian, Andrea Tanzer, Mark Diekhans, Alexandre Reymond, Tim J Hubbard, Je

Journal:

Year:

2012

Language:

english

File:

PDF, 3.06 MB

english, 2012

11

Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3

Seth Frietze, Rui Wang, Lijing Yao, Yu Gyoung Tak, Zhenqing Ye, Malaina Gaddis, Heather Witt, Peggy J Farnham, Victor X Jin

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Year:

2012

Language:

english

File:

PDF, 3.30 MB

english, 2012

12

RELATCH: relative optimality in metabolic networks explains robust metabolic and regulatory responses to perturbations

Joonhoon Kim, Jennifer L Reed

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Year:

2012

Language:

english

File:

PDF, 432 KB

english, 2012

13

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

Xochitl C Morgan, Timothy L Tickle, Harry Sokol, Dirk Gevers, Kathryn L Devaney, Doyle V Ward, Joshua A Reyes, Samir A Shah, Neal LeLeiko, Scott B Snapper, Athos Bousvaros, Joshua Korzenik, Bruce E Sa

Journal:

Year:

2012

Language:

english

File:

PDF, 553 KB

english, 2012

14

Genome-wide analysis of intracellular pH reveals quantitative control of cell division rate by pHcinSaccharomyces cerevisiae

Rick Orij, Malene L Urbanus, Franco J Vizeacoumar, Guri Giaever, Charles Boone, Corey Nislow, Stanley Brul, Gertien J Smits

Journal:

Year:

2012

Language:

english

File:

PDF, 431 KB

english, 2012

15

Correlation of proteome-wide changes with social immunity behaviors provides insight into resistance to the parasitic mite,Varroa destructor, in the honey bee (Apis mellifera)

Robert Parker, M Marta Guarna, Andony P Melathopoulos, Kyung-Mee Moon, Rick White, Elizabeth Huxter, Stephen F Pernal, Leonard J Foster

Journal:

Year:

2012

Language:

english

File:

PDF, 397 KB

english, 2012