Volume 15; Issue 8

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Genome Biology
Volume 15; Issue 8

Genome Biology

Volume 15; Issue 8

1

MBASED: allele-specific expression detection in cancer tissues and cell lines

Oleg Mayba,Houston N Gilbert,Jinfeng Liu,Peter M Haverty…

Journal:

Year:

2014

Language:

english

File:

PDF, 1.79 MB

english, 2014

2

Non-exhaustive DNA methylation-mediated transposon silencing in the black truffle genome, a complex fungal genome with massive repeat element content

Barbara Montanini,Pao-Yang Chen,Marco Morselli,Artur Jaroszewicz…

Journal:

Year:

2014

Language:

english

File:

PDF, 2.42 MB

english, 2014

3

Glucocorticoid receptor binds half sites as a monomer and regulates specific target genes

Benjamin J Schiller,Rajas Chodankar,Lisa C Watson,Michael R Stallcup…

Journal:

Year:

2014

Language:

english

File:

PDF, 1.50 MB

english, 2014

4

Metastatic tumor evolution and organoid modeling implicateTGFBR2as a cancer driver in diffuse gastric cancer

Lincoln D Nadauld,Sarah Garcia,Georges Natsoulis,John M Bell…

Journal:

Year:

2014

Language:

english

File:

PDF, 3.28 MB

english, 2014

5

Transcriptome sequencing reveals altered long intergenic non-coding RNAs in lung cancer

Nicole M White,Christopher R Cabanski,Jessica M Silva-Fisher,Ha X Dang…

Journal:

Year:

2014

Language:

english

File:

PDF, 3.00 MB

english, 2014

6

Deep sequencing reveals clonal evolution patterns and mutation events associated with relapse in B-cell lymphomas

Yanwen Jiang,David Redmond,Kui Nie,Ken W Eng,Thomas Clozel…

Journal:

Year:

2014

Language:

english

File:

PDF, 1.65 MB

english, 2014

7

Advancing clinical oncology through genome biology and technology

Anna M Varghese,Michael F Berger

Journal:

Year:

2014

Language:

english

File:

PDF, 184 KB

english, 2014

8

Building a data sharing model for global genomic research

Patricia Kosseim,Edward S Dove,Carman Baggaley,Eric M Meslin…

Journal:

Year:

2014

Language:

english

File:

PDF, 188 KB

english, 2014

9

Organizing knowledge to enable personalization of medicine in cancer

Benjamin M Good,Benjamin J Ainscough,Josh F McMichael,Andrew I Su…

Journal:

Year:

2014

Language:

english

File:

PDF, 585 KB

english, 2014

10

One patient, two lesions, two oncogenic drivers of gastric cancer

Clara Alsinet,Marco Ranzani,David J Adams

Journal:

Year:

2014

Language:

english

File:

PDF, 258 KB

english, 2014

11

The promise of circulating tumor cell analysis in cancer management

Joaquin Mateo,Marco Gerlinger,Daniel Nava Rodrigues,Johann S de Bono

Journal:

Year:

2014

Language:

english

File:

PDF, 769 KB

english, 2014

12

Genotyping cell-free tumor DNA in the blood to detect residual disease and drug resistance

Giulia Siravegna,Alberto Bardelli

Journal:

Year:

2014

Language:

english

File:

PDF, 479 KB

english, 2014

13

Cancer genomics: one cell at a time

Nicholas E Navin

Journal:

Year:

2014

Language:

english

File:

PDF, 521 KB

english, 2014

14

Deciphering intratumor heterogeneity and temporal acquisition of driver events to refine precision medicine

Crispin Hiley,Elza C de Bruin,Nicholas McGranahan,Charles Swanton

Journal:

Year:

2014

Language:

english

File:

PDF, 415 KB

english, 2014

15

Comparative sequencing analysis reveals high genomic concordance between matched primary and metastatic colorectal cancer lesions

Brannon, A, Vakiani, Efsevia, Sylvester, Brooke E, Scott, Sasinya N, McDermott, Gregory, Shah, Ronak H, Kania, Krishan, Viale, Agnes, Oschwald, Dayna M, Vacic, Vladimir, Emde, Anne-Katrin, Cercek, And

Journal:

Year:

2014

Language:

english

File:

PDF, 1.05 MB

english, 2014

16

Genome-driven integrated classification of breast cancer validated in over 7,500 samples

Ali, H, Rueda, Oscar M, Chin, Suet-Feung, Curtis, Christina, Dunning, Mark J, Aparicio, Samuel, Caldas, Carlos

Journal:

Year:

2014

Language:

english

File:

PDF, 950 KB

english, 2014

17

Diverse modes of genomic alteration in hepatocellular carcinoma

Jhunjhunwala, Suchit, Jiang, Zhaoshi, Stawiski, Eric W, Gnad, Florian, Liu, Jinfeng, Mayba, Oleg, Du, Pan, Diao, Jingyu, Johnson, Stephanie, Wong, Kwong-Fai, Gao, Zhibo, Li, Yingrui, Wu, Thomas D, Kap

Journal:

Year:

2014

Language:

english

File:

PDF, 2.02 MB

english, 2014

18

Unraveling the clonal hierarchy of somatic genomic aberrations

Prandi, Davide, Baca, Sylvan C, Romanel, Alessandro, Barbieri, Christopher E, Mosquera, Juan-Miguel, Fontugne, Jacqueline, Beltran, Himisha, Sboner, Andrea, Garraway, Levi A, Rubin, Mark A, Demichelis

Journal:

Year:

2014

Language:

english

File:

PDF, 3.55 MB

english, 2014

19

Methylome analysis identifies a Wilms tumor epigenetic biomarker detectable in blood

Charlton, Jocelyn, Williams, Richard D, Weeks, Mark, Sebire, Neil J, Popov, Sergey, Vujanic, Gordan, Mifsud, William, Alcaide-German, Marisa, Butcher, Lee M, Beck, Stephan, Pritchard-Jones, Kathy

Journal:

Year:

2014

Language:

english

File:

PDF, 808 KB

english, 2014

20

SubcloneSeeker: a computational framework for reconstructing tumor clone structure for cancer variant interpretation and prioritization

Qiao, Yi, Quinlan, Aaron R, Jazaeri, Amir A, Verhaak, Roeland, Wheeler, David A, Marth, Gabor T

Journal:

Year:

2014

Language:

english

File:

PDF, 1.88 MB

english, 2014

21

Heterogeneity in the inter-tumor transcriptome of high risk prostate cancer

Wyatt, Alexander W, Mo, Fan, Wang, Kendric, McConeghy, Brian, Brahmbhatt, Sonal, Jong, Lina, Mitchell, Devon M, Johnston, Rebecca L, Haegert, Anne, Li, Estelle, Liew, Janet, Yeung, Jake, Shrestha, Rau

Journal:

Year:

2014

Language:

english

File:

PDF, 3.24 MB

english, 2014

22

DNA copy number evolution inDrosophilacell lines

Lee, Hangnoh, McManus, C, Cho, Dong-Yeon, Eaton, Matthew, Renda, Fioranna, Somma, Maria, Cherbas, Lucy, May, Gemma, Powell, Sara, Zhang, Dayu, Zhan, Lijun, Resch, Alissa, Andrews, Justen, Celniker, Su

Journal:

Year:

2014

Language:

english

File:

PDF, 3.97 MB

english, 2014

23

OrthoClust: an orthology-based network framework for clustering data across multiple species

Yan, Koon-Kiu, Wang, Daifeng, Rozowsky, Joel, Zheng, Henry, Cheng, Chao, Gerstein, Mark

Journal:

Year:

2014

Language:

english

File:

PDF, 1.99 MB

english, 2014

24

Development of synchronous VHL syndrome tumors reveals contingencies and constraints to tumor evolution

Fisher, Rosalie, Horswell, Stuart, Rowan, Andrew, Salm, Maximilian P, de Bruin, Elza C, Gulati, Sakshi, McGranahan, Nicholas, Stares, Mark, Gerlinger, Marco, Varela, Ignacio, Crockford, Andrew, Favero

Journal:

Year:

2014

Language:

english

File:

PDF, 2.33 MB

english, 2014

25

Genome-wide DNA methylation profiles in progression toin situand invasive carcinoma of the breast with impact on gene transcription and prognosis

Fleischer, Thomas, Frigessi, Arnoldo, Johnson, Kevin C, Edvardsen, Hege, Touleimat, Nizar, Klajic, Jovana, Riis, Margit, Haakensen, Vilde D, Wärnberg, Fredrik, Naume, Bjørn, Helland, Åslaug, Børresen-

Journal:

Year:

2014

Language:

english

File:

PDF, 2.67 MB

english, 2014

26

Deep sequencing of the X chromosome reveals the proliferation history of colorectal adenomas

De Grassi, Anna, Iannelli, Fabio, Cereda, Matteo, Volorio, Sara, Melocchi, Valentina, Viel, Alessandra, Basso, Gianluca, Laghi, Luigi, Caselle, Michele, Ciccarelli, Francesca D

Journal:

Year:

2014

Language:

english

File:

PDF, 1.67 MB

english, 2014

27

Cancer progression modeling using static sample data

Sun, Yijun, Yao, Jin, Nowak, Norma J, Goodison, Steve

Journal:

Year:

2014

Language:

english

File:

PDF, 2.10 MB

english, 2014

28

GoIFISH: a system for the quantification of single cell heterogeneity from IFISH images

Trinh, Anne, Rye, Inga H, Almendro, Vanessa, Helland, Åslaug, Russnes, Hege G, Markowetz, Florian

Journal:

Year:

2014

Language:

english

File:

PDF, 3.35 MB

english, 2014

29

A WIMSical approach to decoding DNA methylation in myeloid leukemia

Guryanova, Olga A, Levine, Ross L

Journal:

Year:

2014

Language:

english

File:

PDF, 139 KB

english, 2014