Volume 15; Issue 9

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Genome Biology
Volume 15; Issue 9

Genome Biology

Volume 15; Issue 9

1

Big effects of small RNAs on legume root biotic interactions

Wang, Huan, Chua, Nam-Hai

Journal:

Year:

2014

Language:

english

File:

PDF, 121 KB

english, 2014

2

Toward better benchmarking: challenge-based methods assessment in cancer genomics

Boutros, Paul C, Margolin, Adam A, Stuart, Joshua M, Califano, Andrea, Stolovitzky, Gustavo

Journal:

Year:

2014

Language:

english

File:

PDF, 543 KB

english, 2014

3

MicroRNA regulation of tumorigenesis, cancer progression and interpatient heterogeneity: towards clinical use

Nana-Sinkam, S, Croce, Carlo M

Journal:

Year:

2014

Language:

english

File:

PDF, 303 KB

english, 2014

4

Accelerating precision biology and medicine with computational biology and bioinformatics

Lussier, Yves A, Li, Haiquan, Pouladi, Nima, Li, Qike

Journal:

Year:

2014

Language:

english

File:

PDF, 119 KB

english, 2014

5

Allelic mapping bias in RNA-sequencing is not a major confounder in eQTL studies

Panousis, Nikolaos I, Gutierrez-Arcelus, Maria, Dermitzakis, Emmanouil T, Lappalainen, Tuuli

Journal:

Year:

2014

Language:

english

File:

PDF, 2.05 MB

english, 2014

6

DiffVar: a new method for detecting differential variability with application to methylation in cancer and aging

Phipson, Belinda, Oshlack, Alicia

Journal:

Year:

2014

Language:

english

File:

PDF, 1.04 MB

english, 2014

7

The genome sequence of the Antarctic bullhead notothen reveals evolutionary adaptations to a cold environment

Shin, Seung, Ahn, Do, Kim, Su, Pyo, Chul, Lee, Hyoungseok, Kim, Mi-Kyeong, Lee, Jungeun, Lee, Jong, Detrich, H, Postlethwait, John H, Edwards, David, Lee, Sung, Lee, Jun, Park, Hyun

Journal:

Year:

2014

Language:

english

File:

PDF, 3.41 MB

english, 2014

8

A general framework for analyzing tumor subclonality using SNP array and DNA sequencing data

Li, Bo, Li, Jun Z

Journal:

Year:

2014

Language:

english

File:

PDF, 2.59 MB

english, 2014

9

Cancer genomics just got personal

Marszalek, Rafal T

Journal:

Year:

2014

Language:

english

File:

PDF, 133 KB

english, 2014

10

Spatial and temporal evolution of distal 10q deletion, a prognostically unfavorable event in diffuse low-grade gliomas

van Thuijl, Hinke F, Scheinin, Ilari, Sie, Daoud, Alentorn, Agusti, van Essen, Hendrik F, Cordes, Martijn, Fleischeuer, Ruth, Gijtenbeek, Anja M, Beute, Guus, van den Brink, Wimar A, Meijer, Gerrit A,

Journal:

Year:

2014

Language:

english

File:

PDF, 1.87 MB

english, 2014

11

DNA demethylases target promoter transposable elements to positively regulate stress responsive genes inArabidopsis

Le, Tuan-Ngoc, Schumann, Ulrike, Smith, Neil A, Tiwari, Sameer, Au, Phil, Zhu, Qian-Hao, Taylor, Jennifer M, Kazan, Kemal, Llewellyn, Danny J, Zhang, Ren, Dennis, Elizabeth S, Wang, Ming-Bo

Journal:

Year:

2014

Language:

english

File:

PDF, 2.00 MB

english, 2014

12

Prediction of LDL cholesterol response to statin using transcriptomic and genetic variation

Kim, Kyungpil, Bolotin, Eugene, Theusch, Elizabeth, Huang, Haiyan, Medina, Marisa W, Krauss, Ronald M

Journal:

Year:

2014

Language:

english

File:

PDF, 1.45 MB

english, 2014

13

Genome analysis of a major urban malaria vector mosquito,Anopheles stephensi

Jiang, Xiaofang, Peery, Ashley, Hall, A, Sharma, Atashi, Chen, Xiao-Guang, Waterhouse, Robert M, Komissarov, Aleksey, Riehle, Michelle M, Shouche, Yogesh, Sharakhova, Maria V, Lawson, Dan, Pakpour, Na

Journal:

Year:

2014

Language:

english

File:

PDF, 7.50 MB

english, 2014

14

Global loss of DNA methylation uncovers intronic enhancers in genes showing expression changes

Blattler, Adam, Yao, Lijing, Witt, Heather, Guo, Yu, Nicolet, Charles M, Berman, Benjamin P, Farnham, Peggy J

Journal:

Year:

2014

Language:

english

File:

PDF, 4.09 MB

english, 2014

15

Deletions of chromosomal regulatory boundaries are associated with congenital disease

Ibn-Salem, Jonas, Köhler, Sebastian, Love, Michael I, Chung, Ho-Ryun, Huang, Ni, Hurles, Matthew E, Haendel, Melissa, Washington, Nicole L, Smedley, Damian, Mungall, Christopher J, Lewis, Suzanna E, O

Journal:

Year:

2014

Language:

english

File:

PDF, 1.23 MB

english, 2014

16

Checkpoints couple transcription network oscillator dynamics to cell-cycle progression

Bristow, Sara L, Leman, Adam R, Simmons Kovacs, Laura A, Deckard, Anastasia, Harer, John, Haase, Steven B

Journal:

Year:

2014

Language:

english

File:

PDF, 3.51 MB

english, 2014

17

The multitude of molecular analyses in cancer: the opening of Pandora’s box

Russnes, Hege G, Lønning, Per E, Børresen-Dale, Anne-Lise, Lingjærde, Ole C

Journal:

Year:

2014

Language:

english

File:

PDF, 511 KB

english, 2014

18

Polygenicin vivovalidation of cancer mutations using transposons

Chew, Su Kit, Lu, Dong, Campos, Lia S, Scott, Kenneth L, Saci, Abdel, Wang, Juexuan, Collinson, Adam, Raine, Keiran, Hinton, Jonathan, Teague, Jon W, Jones, David, Menzies, Andrew, Butler, Adam P, Gam

Journal:

Year:

2014

Language:

english

File:

PDF, 1.76 MB

english, 2014

19

RRHP: a tag-based approach for 5-hydroxymethylcytosine mapping at single-site resolution

Petterson, Adam, Chung, Tzu, Tan, Darany, Sun, Xueguang, Jia, Xi-Yu

Journal:

Year:

2014

Language:

english

File:

PDF, 2.63 MB

english, 2014

20

The small RNA diversity fromMedicago truncatularoots under biotic interactions evidences the environmental plasticity of the miRNAome

Formey, Damien, Sallet, Erika, Lelandais-Brière, Christine, Ben, Cécile, Bustos-Sanmamed, Pilar, Niebel, Andreas, Frugier, Florian, Combier, Jean, Debellé, Frédéric, Hartmann, Caroline, Poulain, Julie

Journal:

Year:

2014

Language:

english

File:

PDF, 1.58 MB

english, 2014

21

Individualizing kinase-targeted cancer therapy: the paradigm of chronic myeloid leukemia

Eiring, Anna M, Deininger, Michael W

Journal:

Year:

2014

Language:

english

File:

PDF, 1.03 MB

english, 2014

22

Tumor heterogeneity: next-generation sequencing enhances the view from the pathologist's microscope

Aparicio, Samuel, Mardis, Elaine

Journal:

Year:

2014

Language:

english

File:

PDF, 126 KB

english, 2014

23

Deciphering clonality in aneuploid breast tumors using SNP array and sequencing data

Lönnstedt, Ingrid M, Caramia, Franco, Li, Jason, Fumagalli, Debora, Salgado, Roberto, Rowan, Andrew, Salm, Max, Kanu, Nnennaya, Savas, Peter, Horswell, Stuart, Gade, Stephan, Loibl, Sibylle, Neven, Pa

Journal:

Year:

2014

Language:

english

File:

PDF, 4.23 MB

english, 2014

24

Dynamic evolution of clonal epialleles revealed by methclone

Li, Sheng, Garrett-Bakelman, Francine, Perl, Alexander E, Luger, Selina M, Zhang, Chao, To, Bik L, Lewis, Ian D, Brown, Anna L, D’Andrea, Richard J, Ross, M Elizabeth, Levine, Ross, Carroll, Martin, M

Journal:

Year:

2014

Language:

english

File:

PDF, 1.44 MB

english, 2014

25

Cfp1 is required for gene expression-dependent H3K4 trimethylation and H3K9 acetylation in embryonic stem cells

Clouaire, Thomas, Webb, Shaun, Bird, Adrian

Journal:

Year:

2014

Language:

english

File:

PDF, 1.86 MB

english, 2014

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