Volume 8; Issue 5

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Genome Biology
Volume 8; Issue 5

Genome Biology

Volume 8; Issue 5

1

A recipe for high impact

Murat Cokol, Raul Rodriguez-Esteban, Andrey Rzhetsky

Journal:

Year:

2007

Language:

english

File:

PDF, 580 KB

english, 2007

2

Conversion of amino-acid sequence in proteins to classical music: search for auditory patterns

Rie Takahashi, Jeffrey H Miller

Journal:

Year:

2007

Language:

english

File:

PDF, 164 KB

english, 2007

3

Chickens get their place in the sun

Charalampos Rallis

Journal:

Year:

2007

Language:

english

File:

PDF, 51 KB

english, 2007

4

The fungal frontier

Jill R Blankenship, Aaron P Mitchell

Journal:

Year:

2007

Language:

english

File:

PDF, 56 KB

english, 2007

5

The integrins

Yoshikazu Takada, Xiaojing Ye, Scott Simon

Journal:

Year:

2007

Language:

english

File:

PDF, 327 KB

english, 2007

6

A rational route to probing membrane proteins

Journal:

Year:

2007

Language:

english

File:

PDF, 52 KB

english, 2007

7

Evaluating dosage compensation as a cause of duplicate gene retention inParamecium tetraurelia

Timothy Hughes, Diana Ekman, Himanshu Ardawatia, Arne Elofsson…

Journal:

Year:

2007

Language:

english

File:

PDF, 101 KB

english, 2007

8

Mouse maps of gene expression in the brain

Susan E Koester, Thomas R Insel

Journal:

Year:

2007

Language:

english

File:

PDF, 747 KB

english, 2007

9

Inconvenient truths

Gregory A Petsko

Journal:

Year:

2007

Language:

english

File:

PDF, 48 KB

english, 2007

10

Evolution of the core and pan-genome ofStreptococcus: positive selection, recombination, and genome composition

Tristan Lefébure, Michael J Stanhope

Journal:

Year:

2007

Language:

english

File:

PDF, 3.48 MB

english, 2007

11

Towards the uniform distribution of nullPvalues on Affymetrix microarrays

Anthony A Fodor, Timothy L Tickle, Christine Richardson

Journal:

Year:

2007

Language:

english

File:

PDF, 6.81 MB

english, 2007

12

Global transcriptional responses of fission and budding yeast to changes in copper and iron levels: a comparative study

Gabriella Rustici, Harm van Bakel, Daniel H Lackner, Frank C Holstege…

Journal:

Year:

2007

Language:

english

File:

PDF, 1.00 MB

english, 2007

13

cis-Decoder discovers constellations of conserved DNA sequences shared among tissue-specific enhancers

Thomas Brody, Wayne Rasband, Kevin Baler, Alexander Kuzin, Mukta Kundu…

Journal:

Year:

2007

Language:

english

File:

PDF, 768 KB

english, 2007

14

Revealing signaling pathway deregulation by using gene expression signatures and regulatory motif analysis

Yingchun Liu, Markus Ringnér

Journal:

Year:

2007

Language:

english

File:

PDF, 344 KB

english, 2007

15

Tilescope: online analysis pipeline for high-density tiling microarray data

Zhengdong D Zhang, Joel Rozowsky, Hugo YK Lam, Jiang Du, Michael Snyder…

Journal:

Year:

2007

Language:

english

File:

PDF, 818 KB

english, 2007

16

An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data

Michał J Okoniewski, Tim Yates, Siân Dibben, Crispin J Miller

Journal:

Year:

2007

Language:

english

File:

PDF, 954 KB

english, 2007

17

A distance difference matrix approach to identifying transcription factors that regulate differential gene expression

Pieter De Bleser, Bart Hooghe, Dominique Vlieghe, Frans van Roy

Journal:

Year:

2007

Language:

english

File:

PDF, 441 KB

english, 2007

18

A global view of gene expression in lithium and zinc treated sea urchin embryos: new components of gene regulatory networks

Albert J Poustka, Alexander Kühn, Detlef Groth, Vesna Weise…

Journal:

Year:

2007

Language:

english

File:

PDF, 4.07 MB

english, 2007

19

Monitoring of gene knockouts: genome-wide profiling of conditionally essential genes

Lisa K Smith, Maria J Gomez, Konstantin Y Shatalin, Hyunwoo Lee…

Journal:

Year:

2007

Language:

english

File:

PDF, 380 KB

english, 2007

20

Gene expression variation in Down's syndrome mice allows prioritization of candidate genes

Marc Sultan, Ilaria Piccini, Daniela Balzereit, Ralf Herwig…

Journal:

Year:

2007

Language:

english

File:

PDF, 674 KB

english, 2007

21

GSMN-TB: a web-based genome-scale network model ofMycobacterium tuberculosismetabolism

Dany JV Beste, Tracy Hooper, Graham Stewart, Bhushan Bonde…

Journal:

Year:

2007

Language:

english

File:

PDF, 1.36 MB

english, 2007

22

Optimization and clinical validation of a pathogen detection microarray

Christopher W Wong, Charlie Lee Wah Heng, Leong Wan Yee, Shirlena WL Soh…

Journal:

Year:

2007

Language:

english

File:

PDF, 1.20 MB

english, 2007

23

Unequal evolutionary conservation of human protein interactions in interologous networks

Kevin R Brown, Igor Jurisica

Journal:

Year:

2007

Language:

english

File:

PDF, 437 KB

english, 2007

24

Decline of nucleotide excision repair capacity in agingCaenorhabditis elegans

Joel N Meyer, Windy A Boyd, Gregory A Azzam, Astrid C Haugen…

Journal:

Year:

2007

Language:

english

File:

PDF, 773 KB

english, 2007

25

ngLOC: ann-gram-based Bayesian method for estimating the subcellular proteomes of eukaryotes

Brian R King, Chittibabu Guda

Journal:

Year:

2007

Language:

english

File:

PDF, 432 KB

english, 2007

26

Gene expression analysis of nuclear factor I-A deficient mice indicates delayed brain maturation

Yong Wee Wong, Christian Schulze, Thomas Streichert…

Journal:

Year:

2007

Language:

english

File:

PDF, 1.74 MB

english, 2007

27

Threshold-free high-power methods for the ontological analysis of genome-wide gene-expression studies

Björn Nilsson, Petra Håkansson, Mikael Johansson, Sven Nelander…

Journal:

Year:

2007

Language:

english

File:

PDF, 1.34 MB

english, 2007

28

Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors

Jason I Herschkowitz, Karl Simin, Victor J Weigman, Igor Mikaelian…

Journal:

Year:

2007

Language:

english

File:

PDF, 6.85 MB

english, 2007

29

Species-wide distribution of highly polymorphic minisatellite markers suggests past and present genetic exchanges among house mouse subspecies

François Bonhomme, Eric Rivals, Annie Orth, Gemma R Grant…

Journal:

Year:

2007

Language:

english

File:

PDF, 4.32 MB

english, 2007

30

Genome-wide identification of novel expression signatures reveal distinct patterns and prevalence of binding motifs for p53, nuclear factor-κB and other signal transcription factors in head and neck squamous cell carcinoma

Bin Yan, Xinping Yang, Tin-Lap Lee, Jay Friedman, Jun Tang…

Journal:

Year:

2007

Language:

english

File:

PDF, 3.26 MB

english, 2007

31

Exon arrays provide accurate assessments of gene expression

Karen Kapur, Yi Xing, Zhengqing Ouyang, Wing Hung Wong

Journal:

Year:

2007

Language:

english

File:

PDF, 3.94 MB

english, 2007

32

Regulatory conservation of protein coding and microRNA genes in vertebrates: lessons from the opossum genome

Shaun Mahony, David L Corcoran, Eleanor Feingold, Panayiotis V Benos

Journal:

Year:

2007

Language:

english

File:

PDF, 560 KB

english, 2007

33

Characterizing the expression of the human olfactory receptor gene family using a novel DNA microarray

Xiaohong Zhang, Omar De la Cruz, Jayant M Pinto, Dan Nicolae…

Journal:

Year:

2007

Language:

english

File:

PDF, 857 KB

english, 2007

34

A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database

José L Jiménez, Björn Hegemann, James RA Hutchins, Jan-Michael Peters…

Journal:

Year:

2007

Language:

english

File:

PDF, 5.29 MB

english, 2007

35

Analysis of 14 BAC sequences from theAedes aegyptigenome: a benchmark for genome annotation and assembly

Neil F Lobo, Kathy S Campbell, Daniel Thaner, Becky deBruyn, Hean Koo…

Journal:

Year:

2007

Language:

english

File:

PDF, 194 KB

english, 2007

36

Modular architecture of protein structures and allosteric communications: potential implications for signaling proteins and regulatory linkages

Antonio del Sol, Marcos J Araúzo-Bravo, Dolors Amoros, Ruth Nussinov

Journal:

Year:

2007

Language:

english

File:

PDF, 1.19 MB

english, 2007

37

Modular organization in the reductive evolution of protein-protein interaction networks

Javier Tamames, Andrés Moya, Alfonso Valencia

Journal:

Year:

2007

Language:

english

File:

PDF, 3.21 MB

english, 2007

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