Volume 8; Issue 6

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Genome Biology
Volume 8; Issue 6

Genome Biology

Volume 8; Issue 6

1

An epigenetic role for noncoding RNAs and intragenic DNA methylation

James M Flanagan, Laurence Wild

Journal:

Year:

2007

Language:

english

File:

PDF, 60 KB

english, 2007

2

The calpains: modular designs and functional diversity

Dorothy E Croall, Klaus Ersfeld

Journal:

Year:

2007

Language:

english

File:

PDF, 532 KB

english, 2007

3

Pyrosequencing positions nucleosomes precisely

Tom Owen-Hughes, Maik Engeholm

Journal:

Year:

2007

Language:

english

File:

PDF, 222 KB

english, 2007

4

Topological variation in single-gene phylogenetic trees

Jose Castresana

Journal:

Year:

2007

Language:

english

File:

PDF, 87 KB

english, 2007

5

An idea whose time has gone

Gregory A Petsko

Journal:

Year:

2007

Language:

english

File:

PDF, 48 KB

english, 2007

6

Genetic flux over time in theSalmonellalineage

Georgios S Vernikos, Nicholas R Thomson, Julian Parkhill

Journal:

Year:

2007

Language:

english

File:

PDF, 510 KB

english, 2007

7

Comparison ofFrancisella tularensisgenomes reveals evolutionary events associated with the emergence of human pathogenic strains

Laurence Rohmer, Christine Fong, Simone Abmayr, Michael Wasnick…

Journal:

Year:

2007

Language:

english

File:

PDF, 945 KB

english, 2007

8

A functional map of NFκB signaling identifies novel modulators and multiple system controls

Thomas A Halsey, Longlong Yang, John R Walker, John B Hogenesch…

Journal:

Year:

2007

Language:

english

File:

PDF, 736 KB

english, 2007

9

Functional diversificationof sonic hedgehogparalog enhancers identified by phylogenomic reconstruction

Yavor Hadzhiev, Michael Lang, Raymond Ertzer, Axel Meyer, Uwe Strähle…

Journal:

Year:

2007

Language:

english

File:

PDF, 899 KB

english, 2007

10

A semi-quantitative GeLC-MS analysis of temporal proteome expression in the emerging nosocomial pathogenOchrobactrum anthropi

Leslie James Robert Graham, Mohit K Sharma, Nigel G Ternan…

Journal:

Year:

2007

Language:

english

File:

PDF, 481 KB

english, 2007

11

Functional coordination of alternative splicing in the mammalian central nervous system

Matthew Fagnani, Yoseph Barash, Joanna Y Ip, Christine Misquitta, Qun Pan…

Journal:

Year:

2007

Language:

english

File:

PDF, 1.86 MB

english, 2007

12

Celsius: a community resource for Affymetrix microarray data

Allen Day, Marc RJ Carlson, Jun Dong, Brian D O'Connor, Stanley F Nelson

Journal:

Year:

2007

Language:

english

File:

PDF, 1012 KB

english, 2007

13

Detailed analysis of 15q11-q14 sequence corrects errors and gaps in the public access sequence to fully reveal large segmental duplications at breakpoints for Prader-Willi, Angelman, and inv dup(15) syndromes

Andrew J Makoff, Rachel H Flomen

Journal:

Year:

2007

Language:

english

File:

PDF, 521 KB

english, 2007

14

GC- and AT-rich chromatin domains differ in conformation and histone modification status and are differentially modulated by Rpd3p

Journal:

Year:

2007

Language:

english

File:

PDF, 986 KB

english, 2007

15

Genome position and gene amplification

Pavla Gajduskova, Antoine M Snijders, Serena Kwek, Ritu Roydasgupta…

Journal:

Year:

2007

Language:

english

File:

PDF, 1.17 MB

english, 2007

16

Fast-evolving noncoding sequences in the human genome

Christine P Bird, Barbara E Stranger, Maureen Liu, Daryl J Thomas…

Journal:

Year:

2007

Language:

english

File:

PDF, 444 KB

english, 2007

17

Toxicogenomic analysis ofCaenorhabditis elegansreveals novel genes and pathways involved in the resistance to cadmium toxicity

Yuxia Cui, Sandra J McBride, Windy A Boyd, Scott Alper…

Journal:

Year:

2007

Language:

english

File:

PDF, 1.07 MB

english, 2007

18

Measuring the accuracy of genome-size multiple alignments

Amol Prakash, Martin Tompa

Journal:

Year:

2007

Language:

english

File:

PDF, 376 KB

english, 2007

19

Estimation and correction of non-specific binding in a large-scale spike-in experiment

Eugene F Schuster, Eric Blanc, Linda Partridge, Janet M Thornton

Journal:

Year:

2007

Language:

english

File:

PDF, 1.81 MB

english, 2007

20

Morphine effects on striatal transcriptome in mice

Michal Korostynski, Marcin Piechota, Dorota Kaminska, Wojciech Solecki…

Journal:

Year:

2007

Language:

english

File:

PDF, 4.46 MB

english, 2007

21

Computational and transcriptional evidence for microRNAs in the honey bee genome

Daniel B Weaver, Juan M Anzola, Jay D Evans, Jeffrey G Reid…

Journal:

Year:

2007

Language:

english

File:

PDF, 273 KB

english, 2007

22

Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids?

Jinling Huang, Johann Peter Gogarten

Journal:

Year:

2007

Language:

english

File:

PDF, 404 KB

english, 2007

23

Large-scale analysis of transcriptionalcis-regulatory modules reveals both common features and distinct subclasses

Long Li, Qianqian Zhu, Xin He, Saurabh Sinha, Marc S Halfon

Journal:

Year:

2007

Language:

english

File:

PDF, 677 KB

english, 2007

24

Characterization and modeling of theHaemophilus influenzaecore and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains

Justin S Hogg, Fen Z Hu, Benjamin Janto, Robert Boissy, Jay Hayes…

Journal:

Year:

2007

Language:

english

File:

PDF, 900 KB

english, 2007

25

RAD marker microarrays enable rapid mapping of zebrafish mutations

Michael R Miller, Tressa S Atwood, B Frank Eames, Johann K Eberhart…

Journal:

Year:

2007

Language:

english

File:

PDF, 722 KB

english, 2007

26

Large-scale identification of human genes implicated in epidermal barrier function

Eve Toulza, Nicolas R Mattiuzzo, Marie-Florence Galliano, Nathalie Jonca…

Journal:

Year:

2007

Language:

english

File:

PDF, 3.26 MB

english, 2007

27

The human phylome

Jaime Huerta-Cepas, Hernán Dopazo, Joaquín Dopazo, Toni Gabaldón

Journal:

Year:

2007

Language:

english

File:

PDF, 805 KB

english, 2007

28

LongSAGE profiling of nine human embryonic stem cell lines

Martin Hirst, Allen Delaney, Sean A Rogers, Angelique Schnerch…

Journal:

Year:

2007

Language:

english

File:

PDF, 387 KB

english, 2007

29

LongSAGE analysis of skeletal muscle at three prenatal stages in Tongcheng and Landrace pigs

Zhonglin Tang, Yong Li, Ping Wan, Xiaoping Li, Shuhong Zhao, Bang Liu…

Journal:

Year:

2007

Language:

english

File:

PDF, 627 KB

english, 2007

30

Genetic background influences murine prostate gene expression: implications for cancer phenotypes

Daniella Bianchi-Frias, Colin Pritchard, Brigham H Mecham, Ilsa M Coleman…

Journal:

Year:

2007

Language:

english

File:

PDF, 1.10 MB

english, 2007

31

Evolutionary history and functional implications of protein domains and their combinations in eukaryotes

Masumi Itoh, Jose C Nacher, Kei-ichi Kuma, Susumu Goto, Minoru Kanehisa

Journal:

Year:

2007

Language:

english

File:

PDF, 523 KB

english, 2007

32

The Sas3p and Gcn5p histone acetyltransferases are recruited to similar genes

Lorena E Rosaleny, Ana B Ruiz-García, José García-Martínez…

Journal:

Year:

2007

Language:

english

File:

PDF, 1.34 MB

english, 2007

33

Observing metabolic functions at the genome scale

Jean-Marc Schwartz, Claire Gaugain, Jose C Nacher, Antoine de Daruvar…

Journal:

Year:

2007

Language:

english

File:

PDF, 1.10 MB

english, 2007

34

Correcting for sequence biases in present/absent calls

Eugene F Schuster, Eric Blanc, Linda Partridge, Janet M Thornton

Journal:

Year:

2007

Language:

english

File:

PDF, 1.27 MB

english, 2007

35

Comparative analysis of transposed element insertion within human and mouse genomes revealsAlu's unique role in shaping the human transcriptome

Noa Sela, Britta Mersch, Nurit Gal-Mark, Galit Lev-Maor…

Journal:

Year:

2007

Language:

english

File:

PDF, 813 KB

english, 2007

36

Cloning and characterization of microRNAs from wheat (Triticum aestivumL.)

Yingyin Yao, Ganggang Guo, Zhongfu Ni, Ramanjulu Sunkar, Jinkun Du…

Journal:

Year:

2007

Language:

english

File:

PDF, 621 KB

english, 2007

37

Mixture modeling of transcript abundance classes in natural populations

Wen-Ping Hsieh, Gisele Passador-Gurgel, Eric A Stone, Greg Gibson

Journal:

Year:

2007

Language:

english

File:

PDF, 782 KB

english, 2007