Volume 7; Issue 6

Genome Biology and Evolution

Volume 7; Issue 6

1

Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity

Sperschneider, J., Gardiner, D. M., Thatcher, L. F., Lyons, R., Singh, K. B., Manners, J. M., Taylor, J. M.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.85 MB

english, 2015

2

Transposable Elements and DNA Methylation Create in Embryonic Stem Cells Human-Specific Regulatory Sequences Associated with Distal Enhancers and Noncoding RNAs

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 2.09 MB

english, 2015

3

Molecular Diversity and Gene Evolution of the Venom Arsenal of Terebridae Predatory Marine Snails

Gorson, Juliette, Ramrattan, Girish, Verdes, Aida, Wright, Elizabeth M., Kantor, Yuri, Rajaram Srinivasan, Ramakrishnan, Musunuri, Raj, Packer, Daniel, Albano, Gabriel, Qiu, Wei-Gang, Holford, Mandë

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.90 MB

english, 2015

4

Reptilian Transcriptomes v2.0: An Extensive Resource for Sauropsida Genomics and Transcriptomics

Tzika, Athanasia C., Ullate-Agote, Asier, Grbic, Djordje, Milinkovitch, Michel C.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.54 MB

english, 2015

5

Estimating Gene Expression and Codon-Specific Translational Efficiencies, Mutation Biases, and Selection Coefficients from Genomic Data Alone

Gilchrist, M. A., Chen, W.-C., Shah, P., Landerer, C. L., Zaretzki, R.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 2.08 MB

english, 2015

6

Metagenome Skimming of Insect Specimen Pools: Potential for Comparative Genomics

Linard, B., Crampton-Platt, A., Gillett, C. P. D. T., Timmermans, M. J. T. N., Vogler, A. P.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.65 MB

english, 2015

7

Polymorphism Analysis Reveals Reduced Negative Selection and Elevated Rate of Insertions and Deletions in Intrinsically Disordered Protein Regions

Khan, Tahsin, Douglas, Gavin M., Patel, Priyenbhai, Nguyen Ba, Alex N., Moses, Alan M.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 546 KB

english, 2015

8

Dual Organellar Targeting of Aminoacyl-tRNA Synthetases in Diatoms and Cryptophytes

Gile, Gillian H., Moog, Daniel, Slamovits, Claudio H., Maier, Uwe-G., Archibald, John M.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 2.71 MB

english, 2015

9

The Evolutionary Fate of Alternatively Spliced Homologous Exons after Gene Duplication

Abascal, F., Tress, M. L., Valencia, A.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.19 MB

english, 2015

10

Analysis of Five Gene Sets in Chimpanzees Suggests Decoupling between the Action of Selection on Protein-Coding and on Noncoding Elements

Santpere, G., Carnero-Montoro, E., Petit, N., Serra, F., Hvilsom, C., Rambla, J., Heredia-Genestar, J. M., Halligan, D. L., Dopazo, H., Navarro, A., Bosch, E.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

11

Inference of Evolutionary Forces Acting on Human Biological Pathways

Daub, J. T., Dupanloup, I., Robinson-Rechavi, M., Excoffier, L.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 3.71 MB

english, 2015

12

Adaptation to Low Salinity Promotes Genomic Divergence in Atlantic Cod (Gadus morhua L.)

Berg, P. R., Jentoft, S., Star, B., Ring, K. H., Knutsen, H., Lien, S., Jakobsen, K. S., Andre, C.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 7.51 MB

english, 2015

13

Global Shifts in Genome and Proteome Composition Are Very Tightly Coupled

Brbic, M., Warnecke, T., Krisko, A., Supek, F.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.55 MB

english, 2015

14

Functionally Structured Genomes in Lactobacillus kunkeei Colonizing the Honey Crop and Food Products of Honeybees and Stingless Bees

Tamarit, D., Ellegaard, K. M., Wikander, J., Olofsson, T., Vasquez, A., Andersson, S. G. E.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 4.17 MB

english, 2015

15

Epigenetics, Darwin, and Lamarck

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 168 KB

english, 2015

16

Differential Expression of Genes that Control Respiration Contribute to Thermal Adaptation in Redband Trout (Oncorhynchus mykiss gairdneri)

Garvin, M. R., Thorgaard, G. H., Narum, S. R.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 779 KB

english, 2015

17

Phylogenomic Analysis of Oenococcus oeni Reveals Specific Domestication of Strains to Cider and Wines

Campbell-Sills, H., El Khoury, M., Favier, M., Romano, A., Biasioli, F., Spano, G., Sherman, D. J., Bouchez, O., Coton, E., Coton, M., Okada, S., Tanaka, N., Dols-Lafargue, M., Lucas, P. M.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 589 KB

english, 2015

18

The Origin and Evolution of the Plant Cell Surface: Algal Integrin-Associated Proteins and a New Family of Integrin-Like Cytoskeleton-ECM Linker Proteins

Becker, B., Doan, J. M., Wustman, B., Carpenter, E. J., Chen, L., Zhang, Y., Wong, G. K.- S., Melkonian, M.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 666 KB

english, 2015

19

The Rise and Fall of TRP-N, an Ancient Family of Mechanogated Ion Channels, in Metazoa

Schüler, Andreas, Schmitz, Gregor, Reft, Abigail, Özbek, Suat, Thurm, Ulrich, Bornberg-Bauer, Erich

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.02 MB

english, 2015

20

Evolution of the Translocation and Assembly Module (TAM)

Heinz, E., Selkrig, J., Belousoff, M. J., Lithgow, T.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 2.38 MB

english, 2015

21

Targeted Capture of Phylogenetically Informative Ves SINE Insertions in Genus Myotis

Platt, R. N., Zhang, Y., Witherspoon, D. J., Xing, J., Suh, A., Keith, M. S., Jorde, L. B., Stevens, R. D., Ray, D. A.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 795 KB

english, 2015

22

A New Class of SINEs with snRNA Gene-Derived Heads

Kojima, Kenji K.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 495 KB

english, 2015

23

Complete Genome Sequence and Transcriptomic Analysis of the Novel Pathogen Elizabethkingia anophelis in Response to Oxidative Stress

Li, Yingying, Liu, Yang, Chew, Su Chuen, Tay, Martin, Salido, May Margarette Santillan, Teo, Jeanette, Lauro, Federico M., Givskov, Michael, Yang, Liang

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.04 MB

english, 2015

24

Alarmingly High Segregation Frequencies of Quinolone Resistance Alleles within Human and Animal Microbiomes Are Not Explained by Direct Clinical Antibiotic Exposure

Field, Wesley, Hershberg, Ruth

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 961 KB

english, 2015

25

Distinctive Genome Reduction Rates Revealed by Genomic Analyses of Two Coxiella- Like Endosymbionts in Ticks

Gottlieb, Yuval, Lalzar, Itai, Klasson, Lisa

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 799 KB

english, 2015

26

Comparison of the Venom Peptides and Their Expression in Closely Related Conus Species: Insights into Adaptive Post-speciation Evolution of Conus Exogenomes

Barghi, Neda, Concepcion, Gisela P., Olivera, Baldomero M., Lluisma, Arturo O.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.63 MB

english, 2015

27

Nucleomorph Genome Sequences of Two Chlorarachniophytes, Amorphochlora amoebiformis and Lotharella vacuolata

Suzuki, S., Shirato, S., Hirakawa, Y., Ishida, K.-I.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1004 KB

english, 2015

28

What Does It Take to Evolve an Enhancer? A Simulation-Based Study of Factors Influencing the Emergence of Combinatorial Regulation

Duque, T., Sinha, S.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.15 MB

english, 2015

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