Volume 7; Issue 8

Genome Biology and Evolution

Volume 7; Issue 8

1

Cytonuclear Interactions in the Evolution of Animal Mitochondrial tRNA Metabolism

Pett, Walker, Lavrov, Dennis V.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 727 KB

english, 2015

2

Cancer, Warts, or Asymptomatic Infections: Clinical Presentation Matches Codon Usage Preferences in Human Papillomaviruses

Félez-Sánchez, Marta, Trösemeier, Jan-Hendrik, Bedhomme, Stéphanie, González-Bravo, Maria Isabel, Kamp, Christel, Bravo, Ignacio G.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 2.75 MB

english, 2015

3

Evidence of Statistical Inconsistency of Phylogenetic Methods in the Presence of Multiple Sequence Alignment Uncertainty

Md Mukarram Hossain, A.S., Blackburne, Benjamin P., Shah, Abhijeet, Whelan, Simon

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.28 MB

english, 2015

4

The Highly Reduced Plastome of Mycoheterotrophic Sciaphila (Triuridaceae) Is Colinear with Its Green Relatives and Is under Strong Purifying Selection

Lam, Vivienne K.Y., Soto Gomez, Marybel, Graham, Sean W.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 987 KB

english, 2015

5

Gains and Losses of Transcription Factor Binding Sites in Saccharomyces cerevisiae and Saccharomyces paradoxus

Schaefke, Bernhard, Wang, Tzi-Yuan, Wang, Chuen-Yi, Li, Wen-Hsiung

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 544 KB

english, 2015

6

Widespread Recurrent Patterns of Rapid Repeat Evolution in the Kinetochore Scaffold KNL1

Tromer, Eelco, Snel, Berend, Kops, Geert J.P.L.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.91 MB

english, 2015

7

KLF/SP Transcription Factor Family Evolution: Expansion, Diversification, and Innovation in Eukaryotes

Presnell, Jason S., Schnitzler, Christine E., Browne, William E

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.78 MB

english, 2015

8

A Model of Genome Size Evolution for Prokaryotes in Stable and Fluctuating Environments

Bentkowski, Piotr, Van Oosterhout, Cock, Mock, Thomas

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 619 KB

english, 2015

9

Chemoreceptor Evolution in Hymenoptera and Its Implications for the Evolution of Eusociality

Zhou, Xiaofan, Rokas, Antonis, Berger, Shelley L., Liebig, Jürgen, Ray, Anandasankar, Zwiebel, Laurence J.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 435 KB

english, 2015

10

Multilevel Selection Theory and the Evolutionary Functions of Transposable Elements: Fig. 1.—

Brunet, Tyler D.P., Doolittle, W. Ford

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 330 KB

english, 2015

11

A Genome-Wide Landscape of Retrocopies in Primate Genomes

Navarro, Fábio C.P., Galante, Pedro A.F.

Journal:

Genome Biology and Evolution

Year:

2015

File:

PDF, 926 KB

2015

12

Assessing Recent Selection and Functionality at Long Noncoding RNA Loci in the Mouse Genome

Wiberg, R. Axel W., Halligan, Daniel L., Ness, Rob W., Necsulea, Anamaria, Kaessmann, Henrik, Keightley, Peter D.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 613 KB

english, 2015

13

A Genome-Wide Landscape of Retrocopies in Primate Genomes

Navarro, Fábio C.P., Galante, Pedro A.F.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 926 KB

english, 2015

14

The Evolution of Bony Vertebrate Enhancers at Odds with Their Coding Sequence Landscape

Yousaf, Aisha, Sohail Raza, Muhammad, Ali Abbasi, Amir

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 461 KB

english, 2015

15

Impact of Parental Bos taurus and Bos indicus Origins on Copy Number Variation in Traditional Chinese Cattle Breeds

Zhang, Liangzhi, Jia, Shangang, Plath, Martin, Huang, Yongzhen, Li, Congjun, Lei, Chuzhao, Zhao, Xin, Chen, Hong

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 656 KB

english, 2015

16

Phylogenetic Analysis Supports a Link between DUF1220 Domain Number and Primate Brain Expansion

Zimmer, Fabian, Montgomery, Stephen H.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 388 KB

english, 2015

17

A Novel Terminal-Repeat Retrotransposon in Miniature (TRIM) Is Massively Expressed in Echinococcus multilocularis Stem Cells

Koziol, Uriel, Radio, Santiago, Smircich, Pablo, Zarowiecki, Magdalena, Fernández, Cecilia, Brehm, Klaus

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.48 MB

english, 2015

18

Comparative Genomics of Listeria Sensu Lato: Genus-Wide Differences in Evolutionary Dynamics and the Progressive Gain of Complex, Potentially Pathogenicity-Related Traits through Lateral Gene Transfer

Chiara, Matteo, Caruso, Marta, D’Erchia, Anna Maria, Manzari, Caterina, Fraccalvieri, Rosa, Goffredo, Elisa, Latorre, Laura, Miccolupo, Angela, Padalino, Iolanda, Santagada, Gianfranco, Chiocco, Doria

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.48 MB

english, 2015

19

Gene Loss Dominates As a Source of Genetic Variation within Clonal Pathogenic Bacterial Species

Bolotin, Evgeni, Hershberg, Ruth

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 747 KB

english, 2015

20

Draft Genomes, Phylogenetic Reconstruction, and Comparative Genomics of Two Novel Cohabiting Bacterial Symbionts Isolated from Frankliniella occidentalis

Facey, Paul D., Méric, Guillaume, Hitchings, Matthew D., Pachebat, Justin A., Hegarty, Matt J., Chen, Xiaorui, Morgan, Laura V.A., Hoeppner, James E., Whitten, Miranda M.A., Kirk, William D.J., Dyson,

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.42 MB

english, 2015

21

The Large Mitochondrial Genome of Symbiodinium minutum Reveals Conserved Noncoding Sequences between Dinoflagellates and Apicomplexans

Shoguchi, Eiichi, Shinzato, Chuya, Hisata, Kanako, Satoh, Nori, Mungpakdee, Sutada

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 434 KB

english, 2015

22

What Fraction of Duplicates Observed in Recently Sequenced Genomes Is Segregating and Destined to Fail to Fix?

Teufel, Ashley I., Masel, Joanna, Liberles, David A.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 476 KB

english, 2015

23

Highly Conserved Mitochondrial Genomes among Multicellular Red Algae of the Florideophyceae

Yang, Eun Chan, Kim, Kyeong Mi, Kim, Su Yeon, Lee, JunMo, Boo, Ga Hun, Lee, Jung-Hyun, Nelson, Wendy A., Yi, Gangman, Schmidt, William E., Fredericq, Suzanne, Boo, Sung Min, Bhattacharya, Debashish, Y

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.17 MB

english, 2015

24

Interspecific Differential Expression Analysis of RNA-Seq Data Yields Insight into Life Cycle Variation in Hydractiniid Hydrozoans

Sanders, Steven M., Cartwright, Paulyn

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.42 MB

english, 2015

25

Population Genomics of Infectious and Integrated Wolbachia pipientis Genomes in Drosophila ananassae

Choi, Jae Young, Bubnell, Jaclyn E., Aquadro, Charles F.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 1.15 MB

english, 2015

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