Volume 21; Issue 7

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Genome Research
Volume 21; Issue 7

Genome Research

Volume 21; Issue 7

1

Pervasive haplotypic variation in the spliceo-transcriptome of the human major histocompatibility complex

Vandiedonck, C., Taylor, M. S., Lockstone, H. E., Plant, K., Taylor, J. M., Durrant, C., Broxholme, J., Fairfax, B. P., Knight, J. C.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 851 KB

english, 2011

2

DNA methylation profiling reveals novel biomarkers and important roles for DNA methyltransferases in prostate cancer

Kobayashi, Y., Absher, D. M., Gulzar, Z. G., Young, S. R., McKenney, J. K., Peehl, D. M., Brooks, J. D., Myers, R. M., Sherlock, G.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 1.24 MB

english, 2011

3

Combinatorial binding of transcription factors in the pluripotency control regions of the genome

Ferraris, L., Stewart, A. P., Kang, J., DeSimone, A. M., Gemberling, M., Tantin, D., Fairbrother, W. G.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 1.02 MB

english, 2011

4

Cell type-specific DNA methylation at intragenic CpG islands in the immune system

Deaton, A. M., Webb, S., Kerr, A. R. W., Illingworth, R. S., Guy, J., Andrews, R., Bird, A.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 1.03 MB

english, 2011

5

A survey of the genetics of stomach, liver, and adipose gene expression from a morbidly obese cohort

Greenawalt, D. M., Dobrin, R., Chudin, E., Hatoum, I. J., Suver, C., Beaulaurier, J., Zhang, B., Castro, V., Zhu, J., Sieberts, S. K., Wang, S., Molony, C., Heymsfield, S. B., Kemp, D. M., Reitman, M.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 360 KB

english, 2011

6

Unamplified cap analysis of gene expression on a single-molecule sequencer

Kanamori-Katayama, M., Itoh, M., Kawaji, H., Lassmann, T., Katayama, S., Kojima, M., Bertin, N., Kaiho, A., Ninomiya, N., Daub, C. O., Carninci, P., Forrest, A. R. R., Hayashizaki, Y.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 1.02 MB

english, 2011

7

De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics

Adamidi, C., Wang, Y., Gruen, D., Mastrobuoni, G., You, X., Tolle, D., Dodt, M., Mackowiak, S. D., Gogol-Doering, A., Oenal, P., Rybak, A., Ross, E., Alvarado, A. S., Kempa, S., Dieterich, C., Rajewsk

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 425 KB

english, 2011

8

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq

Islam, S., Kjallquist, U., Moliner, A., Zajac, P., Fan, J.-B., Lonnerberg, P., Linnarsson, S.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 824 KB

english, 2011

9

Association studies for next-generation sequencing

Luo, L., Boerwinkle, E., Xiong, M.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 1.13 MB

english, 2011

10

Prioritizing candidate disease genes by network-based boosting of genome-wide association data

Lee, I., Blom, U. M., Wang, P. I., Shim, J. E., Marcotte, E. M.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 1.39 MB

english, 2011

11

Deep congenic analysis identifies many strong, context-dependent QTLs, one of which, Slc35b4, regulates obesity and glucose homeostasis

Yazbek, S. N., Buchner, D. A., Geisinger, J. M., Burrage, L. C., Spiezio, S. H., Zentner, G. E., Hsieh, C.-W., Scacheri, P. C., Croniger, C. M., Nadeau, J. H.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 474 KB

english, 2011

12

A reduced representation approach to population genetic analyses and applications to human evolution

Luca, F., Hudson, R. R., Witonsky, D. B., Di Rienzo, A.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 982 KB

english, 2011

13

Detection of common single nucleotide polymorphisms synthesizing quantitative trait association of rarer causal variants

Takeuchi, F., Kobayashi, S., Ogihara, T., Fujioka, A., Kato, N.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 408 KB

english, 2011

14

Revealing the genetic structure of a trait by sequencing a population under selection

Parts, L., Cubillos, F. A., Warringer, J., Jain, K., Salinas, F., Bumpstead, S. J., Molin, M., Zia, A., Simpson, J. T., Quail, M. A., Moses, A., Louis, E. J., Durbin, R., Liti, G.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 947 KB

english, 2011

15

Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer

Kim, J. H., Dhanasekaran, S. M., Prensner, J. R., Cao, X., Robinson, D., Kalyana-Sundaram, S., Huang, C., Shankar, S., Jing, X., Iyer, M., Hu, M., Sam, L., Grasso, C., Maher, C. A., Palanisamy, N., Me

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 2.50 MB

english, 2011

16

ECHO: A reference-free short-read error correction algorithm

Kao, W.-C., Chan, A. H., Song, Y. S.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 492 KB

english, 2011

17

A method for detecting IBD regions simultaneously in multiple individuals--with applications to disease genetics

Moltke, I., Albrechtsen, A., Hansen, T. v. O., Nielsen, F. C., Nielsen, R.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 810 KB

english, 2011

18

Genome-wide identification of conserved regulatory function in diverged sequences

Taher, L., McGaughey, D. M., Maragh, S., Aneas, I., Bessling, S. L., Miller, W., Nobrega, M. A., McCallion, A. S., Ovcharenko, I.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 731 KB

english, 2011

19

Ethical and practical challenges of sharing data from genome-wide association studies: The eMERGE Consortium experience

McGuire, A. L., Basford, M., Dressler, L. G., Fullerton, S. M., Koenig, B. A., Li, R., McCarty, C. A., Ramos, E., Smith, M. E., Somkin, C. P., Waudby, C., Wolf, W. A., Clayton, E. W.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 332 KB

english, 2011

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