Volume 22; Issue 6

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Genome Research
Volume 22; Issue 6

Genome Research

Volume 22; Issue 6

1

A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?

Fungtammasan, A., Walsh, E., Chiaromonte, F., Eckert, K. A., Makova, K. D.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 1.33 MB

english, 2012

2

The origin, global distribution, and functional impact of the human 8p23 inversion polymorphism

Salm, M. P. A., Horswell, S. D., Hutchison, C. E., Speedy, H. E., Yang, X., Liang, L., Schadt, E. E., Cookson, W. O., Wierzbicki, A. S., Naoumova, R. P., Shoulders, C. C.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 1.13 MB

english, 2012

3

Genome-wide phosphoacetylation of histone H3 at Drosophila enhancers and promoters

Kellner, W. A., Ramos, E., Van Bortle, K., Takenaka, N., Corces, V. G.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 1.15 MB

english, 2012

4

Coding exons function as tissue-specific enhancers of nearby genes

Birnbaum, R. Y., Clowney, E. J., Agamy, O., Kim, M. J., Zhao, J., Yamanaka, T., Pappalardo, Z., Clarke, S. L., Wenger, A. M., Nguyen, L., Gurrieri, F., Everman, D. B., Schwartz, C. E., Birk, O. S., Be

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 1.03 MB

english, 2012

5

Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk

Brinkman, A. B., Gu, H., Bartels, S. J. J., Zhang, Y., Matarese, F., Simmer, F., Marks, H., Bock, C., Gnirke, A., Meissner, A., Stunnenberg, H. G.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 2.04 MB

english, 2012

6

Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA

Statham, A. L., Robinson, M. D., Song, J. Z., Coolen, M. W., Stirzaker, C., Clark, S. J.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 850 KB

english, 2012

7

Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing

Adey, A., Shendure, J.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 684 KB

english, 2012

8

Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb

Cotney, J., Leng, J., Oh, S., DeMare, L. E., Reilly, S. K., Gerstein, M. B., Noonan, J. P.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 2.27 MB

english, 2012

9

Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics

He, H. H., Meyer, C. A., Chen, M. W., Jordan, V. C., Brown, M., Liu, X. S.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 1.88 MB

english, 2012

10

The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2

Ventura, M., Catacchio, C. R., Sajjadian, S., Vives, L., Sudmant, P. H., Marques-Bonet, T., Graves, T. A., Wilson, R. K., Eichler, E. E.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 2.19 MB

english, 2012

11

Identification of microRNA-regulated gene networks by expression analysis of target genes

Gennarino, V. A., D'Angelo, G., Dharmalingam, G., Fernandez, S., Russolillo, G., Sanges, R., Mutarelli, M., Belcastro, V., Ballabio, A., Verde, P., Sardiello, M., Banfi, S.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 2.22 MB

english, 2012

12

Primate segmental duplication creates novel promoters for the LRRC37 gene family within the 17q21.31 inversion polymorphism region

Bekpen, C., Tastekin, I., Siswara, P., Akdis, C. A., Eichler, E. E.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 1.24 MB

english, 2012

13

BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration

Flockhart, R. J., Webster, D. E., Qu, K., Mascarenhas, N., Kovalski, J., Kretz, M., Khavari, P. A.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 1.87 MB

english, 2012

14

lobSTR: A short tandem repeat profiler for personal genomes

Gymrek, M., Golan, D., Rosset, S., Erlich, Y.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 1.77 MB

english, 2012

15

Unusual combinatorial involvement of poly-A/T tracts in organizing genes and chromatin in Dictyostelium

Chang, G. S., Noegel, A. A., Mavrich, T. N., Muller, R., Tomsho, L., Ward, E., Felder, M., Jiang, C., Eichinger, L., Glockner, G., Schuster, S. C., Pugh, B. F.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 2.67 MB

english, 2012

16

Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis

Marquez, Y., Brown, J. W. S., Simpson, C., Barta, A., Kalyna, M.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 1.88 MB

english, 2012

17

A systematic study of gene expression variation at single-nucleotide resolution reveals widespread regulatory roles for uAUGs

Yun, Y., Adesanya, T. M. A., Mitra, R. D.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 6.32 MB

english, 2012

18

H2B monoubiquitylation is a 5'-enriched active transcription mark and correlates with exon-intron structure in human cells

Jung, I., Kim, S.-K., Kim, M., Han, Y.-M., Kim, Y. S., Kim, D., Lee, D.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 1.80 MB

english, 2012

19

Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB)

Pamp, S. J., Harrington, E. D., Quake, S. R., Relman, D. A., Blainey, P. C.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 1.19 MB

english, 2012

20

A quantitative atlas of polyadenylation in five mammals

Derti, A., Garrett-Engele, P., MacIsaac, K. D., Stevens, R. C., Sriram, S., Chen, R., Rohl, C. A., Johnson, J. M., Babak, T.

Journal:

Genome Research

Year:

2012

Language:

english

File:

PDF, 2.55 MB

english, 2012

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