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Volume 23; Issue 1
Main
Genome Research
Volume 23; Issue 1
Genome Research
Volume 23; Issue 1
1
P-value-based regulatory motif discovery using positional weight matrices
Hartmann, H.
,
Guthohrlein, E. W.
,
Siebert, M.
,
Luehr, S.
,
Soding, J.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 1.78 MB
Your tags:
english, 2013
2
Small noncoding differentially methylated copy-number variants, including lncRNA genes, cause a lethal lung developmental disorder
Szafranski, P.
,
Dharmadhikari, A. V.
,
Brosens, E.
,
Gurha, P.
,
Kolodziejska, K. E.
,
Zhishuo, O.
,
Dittwald, P.
,
Majewski, T.
,
Mohan, K. N.
,
Chen, B.
,
Person, R. E.
,
Tibboel, D.
,
de Klein, A.
,
Pinner, J.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 864 KB
Your tags:
english, 2013
3
Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases
Schadt, E. E.
,
Banerjee, O.
,
Fang, G.
,
Feng, Z.
,
Wong, W. H.
,
Zhang, X.
,
Kislyuk, A.
,
Clark, T. A.
,
Luong, K.
,
Keren-Paz, A.
,
Chess, A.
,
Kumar, V.
,
Chen-Plotkin, A.
,
Sondheimer, N.
,
Korlach, J.
,
Kasar
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 1.44 MB
Your tags:
english, 2013
4
Efficient targeted mutagenesis in the monarch butterfly using zinc-finger nucleases
Merlin, C.
,
Beaver, L. E.
,
Taylor, O. R.
,
Wolfe, S. A.
,
Reppert, S. M.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 1.01 MB
Your tags:
english, 2013
5
RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development
Tan, M. H.
,
Au, K. F.
,
Yablonovitch, A. L.
,
Wills, A. E.
,
Chuang, J.
,
Baker, J. C.
,
Wong, W. H.
,
Li, J. B.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 1.39 MB
Your tags:
english, 2013
6
Genome-wide mapping of human DNA-replication origins: Levels of transcription at ORC1 sites regulate origin selection and replication timing
Dellino, G. I.
,
Cittaro, D.
,
Piccioni, R.
,
Luzi, L.
,
Banfi, S.
,
Segalla, S.
,
Cesaroni, M.
,
Mendoza-Maldonado, R.
,
Giacca, M.
,
Pelicci, P. G.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 1.21 MB
Your tags:
english, 2013
7
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Batut, P.
,
Dobin, A.
,
Plessy, C.
,
Carninci, P.
,
Gingeras, T. R.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 1.63 MB
Your tags:
english, 2013
8
Sequencing the unsequenceable: Expanded CGG-repeat alleles of the fragile X gene
Loomis, E. W.
,
Eid, J. S.
,
Peluso, P.
,
Yin, J.
,
Hickey, L.
,
Rank, D.
,
McCalmon, S.
,
Hagerman, R. J.
,
Tassone, F.
,
Hagerman, P. J.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 1.47 MB
Your tags:
english, 2013
9
Birth and expression evolution of mammalian microRNA genes
Meunier, J.
,
Lemoine, F.
,
Soumillon, M.
,
Liechti, A.
,
Weier, M.
,
Guschanski, K.
,
Hu, H.
,
Khaitovich, P.
,
Kaessmann, H.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 1.08 MB
Your tags:
english, 2013
10
Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
Sharon, I.
,
Morowitz, M. J.
,
Thomas, B. C.
,
Costello, E. K.
,
Relman, D. A.
,
Banfield, J. F.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 1.26 MB
Your tags:
english, 2013
11
Haplotype-based profiling of subtle allelic imbalance with SNP arrays
Vattathil, S.
,
Scheet, P.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 922 KB
Your tags:
english, 2013
12
SOAPindel: Efficient identification of indels from short paired reads
Li, S.
,
Li, R.
,
Li, H.
,
Lu, J.
,
Li, Y.
,
Bolund, L.
,
Schierup, M. H.
,
Wang, J.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 878 KB
Your tags:
english, 2013
13
Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana
Nolte, V.
,
Pandey, R. V.
,
Kofler, R.
,
Schlotterer, C.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 1.79 MB
Your tags:
english, 2013
14
Evolutionary dynamism of the primate LRRC37 gene family
Giannuzzi, G.
,
Siswara, P.
,
Malig, M.
,
Marques-Bonet, T.
,
Mullikin, J. C.
,
Ventura, M.
,
Eichler, E. E.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 1.76 MB
Your tags:
english, 2013
15
GATA3 acts upstream of FOXA1 in mediating ESR1 binding by shaping enhancer accessibility
Theodorou, V.
,
Stark, R.
,
Menon, S.
,
Carroll, J. S.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 2.23 MB
Your tags:
english, 2013
16
Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions
Naval-Sanchez, M.
,
Potier, D.
,
Haagen, L.
,
Sanchez, M.
,
Munck, S.
,
Van de Sande, B.
,
Casares, F.
,
Christiaens, V.
,
Aerts, S.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 2.43 MB
Your tags:
english, 2013
17
Genotype calling and haplotyping in parent-offspring trios
Chen, W.
,
Li, B.
,
Zeng, Z.
,
Sanna, S.
,
Sidore, C.
,
Busonero, F.
,
Kang, H. M.
,
Li, Y.
,
Abecasis, G. R.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 534 KB
Your tags:
english, 2013
18
A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence
Hu, T. T.
,
Eisen, M. B.
,
Thornton, K. R.
,
Andolfatto, P.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 19.23 MB
Your tags:
english, 2013
19
Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting
Arnold, P.
,
Scholer, A.
,
Pachkov, M.
,
Balwierz, P. J.
,
Jorgensen, H.
,
Stadler, M. B.
,
van Nimwegen, E.
,
Schubeler, D.
Journal:
Genome Research
Year:
2013
Language:
english
File:
PDF, 1.08 MB
Your tags:
english, 2013
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