Volume 24; Issue 12

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Genome Research
Volume 24; Issue 12

Genome Research

Volume 24; Issue 12

1

Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation

Artieri, Carlo G., Fraser, Hunter B.

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 4.97 MB

english, 2014

2

Genome-wide map of regulatory interactions in the human genome

Heidari, Nastaran, Phanstiel, Douglas H., He, Chao, Grubert, Fabian, Jahanbani, Fereshteh, Kasowski, Maya, Zhang, Michael Q., Snyder, Michael P.

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 2.74 MB

english, 2014

3

Widespread contribution of transposable elements to the innovation of gene regulatory networks

Sundaram, Vasavi, Cheng, Yong, Ma, Zhihai, Li, Daofeng, Xing, Xiaoyun, Edge, Peter, Snyder, Michael P., Wang, Ting

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 2.57 MB

english, 2014

4

Transposable element dynamics and PIWI regulation impacts lncRNA and gene expression diversity in Drosophila ovarian cell cultures

Sytnikova, Yuliya A., Rahman, Reazur, Chirn, Gung-wei, Clark, Josef P., Lau, Nelson C.

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 5.65 MB

english, 2014

5

Megabase-scale deletion using CRISPR/Cas9 to generate a fully haploid human cell line

Essletzbichler, Patrick, Konopka, Tomasz, Santoro, Federica, Chen, Doris, Gapp, Bianca V., Kralovics, Robert, Brummelkamp, Thijn R., Nijman, Sebastian M.B., Bürckstümmer, Tilmann

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 1009 KB

english, 2014

6

Single haplotype assembly of the human genome from a hydatidiform mole

Steinberg, Karyn Meltz, Schneider, Valerie A., Graves-Lindsay, Tina A., Fulton, Robert S., Agarwala, Richa, Huddleston, John, Shiryev, Sergey A., Morgulis, Aleksandr, Surti, Urvashi, Warren, Wesley C.

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 680 KB

english, 2014

7

In vitro, long-range sequence information for de novo genome assembly via transposase contiguity

Adey, Andrew, Kitzman, Jacob O., Burton, Joshua N., Daza, Riza, Kumar, Akash, Christiansen, Lena, Ronaghi, Mostafa, Amini, Sasan, L. Gunderson, Kevin, Steemers, Frank J., Shendure, Jay

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 707 KB

english, 2014

8

Heritable variation of mRNA decay rates in yeast

Andrie, Jennifer M., Wakefield, Jon, Akey, Joshua M.

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 1.24 MB

english, 2014

9

Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters

Zeevi, Danny, Lubliner, Shai, Lotan-Pompan, Maya, Hodis, Eran, Vesterman, Rita, Weinberger, Adina, Segal, Eran

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 1.89 MB

english, 2014

10

Tn5 transposase and tagmentation procedures for massively scaled sequencing projects

Picelli, Simone, Björklund, Åsa K., Reinius, Björn, Sagasser, Sven, Winberg, Gösta, Sandberg, Rickard

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 992 KB

english, 2014

11

DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly

Scheinin, Ilari, Sie, Daoud, Bengtsson, Henrik, van de Wiel, Mark A., Olshen, Adam B., van Thuijl, Hinke F., van Essen, Hendrik F., Eijk, Paul P., Rustenburg, François, Meijer, Gerrit A., Reijneveld,

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 1.59 MB

english, 2014

12

Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis

Pimkin, Maxim, Kossenkov, Andrew V., Mishra, Tejaswini, Morrissey, Christapher S., Wu, Weisheng, Keller, Cheryl A., Blobel, Gerd A., Lee, Dongwon, Beer, Michael A., Hardison, Ross C., Weiss, Mitchell

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 4.55 MB

english, 2014

13

Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis

Wu, Weisheng, Morrissey, Christapher S., Keller, Cheryl A., Mishra, Tejaswini, Pimkin, Maxim, Blobel, Gerd A., Weiss, Mitchell J., Hardison, Ross C.

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 2.26 MB

english, 2014

14

Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia

Sansom, Stephen N., Shikama-Dorn, Noriko, Zhanybekova, Saule, Nusspaumer, Gretel, Macaulay, Iain C., Deadman, Mary E., Heger, Andreas, Ponting, Chris P., Holländer, Georg A.

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 5.11 MB

english, 2014

15

Alignathon: a competitive assessment of whole-genome alignment methods

Earl, Dent, Nguyen, Ngan, Hickey, Glenn, Harris, Robert S., Fitzgerald, Stephen, Beal, Kathryn, Seledtsov, Igor, Molodtsov, Vladimir, Raney, Brian J., Clawson, Hiram, Kim, Jaebum, Kemena, Carsten, Cha

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 1.86 MB

english, 2014

16

A formal perturbation equation between genotype and phenotype determines the Evolutionary Action of protein-coding variations on fitness

Katsonis, Panagiotis, Lichtarge, Olivier

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 900 KB

english, 2014

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