Volume 9; Issue 5

Main
GigaScience
Volume 9; Issue 5

GigaScience

Volume 9; Issue 5

1

Biospytial: spatial graph-based computing for ecological Big Data

EscamillaÂ Molgora, Juan M, Sedda, Luigi, Atkinson, Peter M

Journal:

Year:

2020

File:

PDF, 5.86 MB

2020

2

Global ocean resistome revealed: Exploring antibiotic resistance gene abundance and distribution in TARA Oceans samples

Cuadrat, Rafael R C, Sorokina, Maria, Andrade, Bruno G, Goris, Tobias, DÃ¡vila, Alberto M R

Journal:

Year:

2020

File:

PDF, 1.37 MB

2020

3

Ewastools: Infinium Human Methylation BeadChip pipeline for population epigenetics integrated into Galaxy

Murat, Katarzyna, GrÃ¼ning, BjÃ¶rn, Poterlowicz, Paulina Wiktoria, Westgate, Gillian, Tobin, Desmond J, Poterlowicz, Krzysztof

Journal:

Year:

2020

File:

PDF, 1.16 MB

2020

4

Expression of concern: Dissection of soybean populations according to selection signatures based on whole-genome sequences

Kim, Jae-Yoon, Jeong, Seongmun, Kim, Kyoung Hyoun, Lim, Won-Jun, Lee, Ho-Yeon, Jeong, Namhee, Moon, Jung-Kyung, Kim, Namshin

Journal:

Year:

2020

File:

PDF, 215 KB

2020

5

Antibiotic resistomes discovered in the gut microbiomes of Korean swine and cattle

Lim, Suk-Kyung, Kim, Dongjun, Moon, Dong-Chan, Cho, Youna, Rho, Mina

Journal:

Year:

2020

File:

PDF, 2.77 MB

2020

6

High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome

Marrano, Annarita, Britton, Monica, Zaini, Paulo A, Zimin, Aleksey V, Workman, Rachael E, Puiu, Daniela, Bianco, Luca, Pierro, Erica Adele Di, Allen, Brian J, Chakraborty, Sandeep, Troggio, Michela, L

Journal:

Year:

2020

File:

PDF, 3.00 MB

2020

7

CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes

Kuhl, Heiner, Li, Ling, Wuertz, Sven, StÃ¶ck, Matthias, Liang, Xu-Fang, Klopp, Christophe

Journal:

Year:

2020

File:

PDF, 10.18 MB

2020

8

The gene-rich genome of the scallop Pecten maximus

Kenny, Nathan J, McCarthy, Shane A, Dudchenko, Olga, James, Katherine, Betteridge, Emma, Corton, Craig, Dolucan, Jale, Mead, Dan, Oliver, Karen, Omer, Arina D, Pelan, Sarah, Ryan, Yan, Sims, Ying, Ske

Journal:

Year:

2020

File:

PDF, 3.30 MB

2020

9

MaRe: Processing Big Data with application containers on Apache Spark

Capuccini, Marco, DahlÃ¶, Martin, Toor, Salman, Spjuth, Ola

Journal:

Year:

2020

File:

PDF, 1.68 MB

2020

10

Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal

Etherington, Graham J, Heavens, Darren, Baker, David, Lister, Ashleigh, McNelly, Rose, Garcia, Gonzalo, Clavijo, Bernardo, Macaulay, Iain, Haerty, Wilfried, DiÂ Palma, Federica

Journal:

Year:

2020

File:

PDF, 2.05 MB

2020

11

Community standards for open cell migration data

Gonzalez-Beltran, Alejandra N, Masuzzo, Paola, Ampe, Christophe, Bakker, Gert-Jan, Besson, SÃ©bastien, Eibl, Robert H, Friedl, Peter, Gunzer, Matthias, Kittisopikul, Mark, DÃ©vÃ©dec, Sylvia E Le, Leo,

Journal:

Year:

2020

File:

PDF, 2.86 MB

2020

12

Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements

Hosseini, Morteza, Pratas, Diogo, Morgenstern, Burkhard, Pinho, Armando J

Journal:

Year:

2020

File:

PDF, 3.93 MB

2020

13

TinderMIX: Time-dose integrated modelling of toxicogenomics data

Serra, Angela, Fratello, Michele, delÂ Giudice, Giusy, SaarimÃ¤ki, Laura Aliisa, Paci, Michelangelo, Federico, Antonio, Greco, Dario

Journal:

Year:

2020

File:

PDF, 1.62 MB

2020

14

parSMURF, a high-performance computing tool for the genome-wide detection of pathogenic variants

Petrini, Alessandro, Mesiti, Marco, Schubach, Max, Frasca, Marco, Danis, Daniel, Re, Matteo, Grossi, Giuliano, Cappelletti, Luca, CastrignanÃ², Tiziana, Robinson, Peter N, Valentini, Giorgio

Journal:

Year:

2020

File:

PDF, 2.97 MB

2020

15

Multi-dimensional machine learning approaches for fruit shape phenotyping in strawberry

Feldmann, Mitchell J, Hardigan, Michael A, Famula, Randi A, LÃ³pez, Cindy M, Tabb, Amy, Cole, Glenn S, Knapp, Steven J

Journal:

Year:

2020

File:

PDF, 4.16 MB

2020