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Volume 9; Issue 6
Main
GigaScience
Volume 9; Issue 6
GigaScience
Volume 9; Issue 6
1
halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments
Krasheninnikova, Ksenia
,
Diekhans, Mark
,
Armstrong, Joel
,
Dievskii, Aleksei
,
Paten, Benedict
,
OâBrien, Stephen
Journal:
GigaScience
Year:
2020
File:
PDF, 278 KB
Your tags:
2020
2
A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment
Li, Junhua
,
Zhong, Huanzi
,
Ramayo-Caldas, Yuliaxis
,
Terrapon, Nicolas
,
Lombard, Vincent
,
Potocki-Veronese, Gabrielle
,
Estellé, Jordi
,
Popova, Milka
,
Yang, Ziyi
,
Zhang, Hui
,
Li, Fang
,
Tang, Shanmei
,
Y
Journal:
GigaScience
Year:
2020
File:
PDF, 1.92 MB
Your tags:
2020
3
Fcirc: A comprehensive pipeline for the exploration of fusion linear and circular RNAs
Cai, Zhaoqing
,
Xue, Hongzhang
,
Xu, Yue
,
Köhler, Jens
,
Cheng, Xiaojie
,
Dai, Yao
,
Zheng, Jie
,
Wang, Haiyun
Journal:
GigaScience
Year:
2020
File:
PDF, 1.22 MB
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2020
4
Recommendations to enhance rigor and reproducibility in biomedical research
Brito, Jaqueline J
,
Li, Jun
,
Moore, Jason H
,
Greene, Casey S
,
Nogoy, Nicole A
,
Garmire, Lana X
,
Mangul, Serghei
Journal:
GigaScience
Year:
2020
File:
PDF, 915 KB
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2020
5
Iterative hard thresholding in genome-wide association studies: Generalized linear models, prior weights, and double sparsity
Chu, Benjamin B
,
Keys, Kevin L
,
German, Christopher A
,
Zhou, Hua
,
Zhou, Jin J
,
Sobel, Eric M
,
Sinsheimer, Janet S
,
Lange, Kenneth
Journal:
GigaScience
Year:
2020
File:
PDF, 1.70 MB
Your tags:
2020
6
Education in the genomics era: Generating high-quality genome assemblies in university courses
Prost, Stefan
,
Winter, Sven
,
De Raad, Jordi
,
Coimbra, Raphael T F
,
Wolf, Magnus
,
Nilsson, Maria A
,
Petersen, Malte
,
Gupta, Deepak K
,
Schell, Tilman
,
Lammers, Fritjof
,
Janke, Axel
Journal:
GigaScience
Year:
2020
File:
PDF, 268 KB
Your tags:
2020
7
SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat
Wang, Wenxi
,
Wang, Zihao
,
Li, Xintong
,
Ni, Zhongfu
,
Hu, Zhaorong
,
Xin, Mingming
,
Peng, Huiru
,
Yao, Yingyin
,
Sun, Qixin
,
Guo, Weilong
Journal:
GigaScience
Year:
2020
File:
PDF, 1.09 MB
Your tags:
2020
8
Genomic consequences of dietary diversification and parallel evolution due to nectarivory in leaf-nosed bats
Gutiérrez-Guerrero, Yocelyn T
,
Ibarra-Laclette, Enrique
,
MartÃnez del RÃo, Carlos
,
Barrera-Redondo, Josué
,
Rebollar, Eria A
,
Ortega, Jorge
,
León-Paniagua, Livia
,
Urrutia, Araxi
,
Aguirre-Planter
Journal:
GigaScience
Year:
2020
File:
PDF, 6.08 MB
Your tags:
2020
9
Galactic Circos: User-friendly Circos plots within the Galaxy platform
Rasche, Helena
,
Hiltemann, Saskia
Journal:
GigaScience
Year:
2020
File:
PDF, 2.97 MB
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2020
10
Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data
Hafezqorani, Saber
,
Yang, Chen
,
Lo, Theodora
,
Nip, Ka Ming
,
Warren, René L
,
Birol, Inanc
Journal:
GigaScience
Year:
2020
File:
PDF, 609 KB
Your tags:
2020
11
Integrative computational epigenomics to build data-driven gene regulation hypotheses
Chen, Tyrone
,
Tyagi, Sonika
Journal:
GigaScience
Year:
2020
File:
PDF, 1.02 MB
Your tags:
2020
12
An improved pig reference genome sequence to enable pig genetics and genomics research
Warr, Amanda
,
Affara, Nabeel
,
Aken, Bronwen
,
Beiki, Hamid
,
Bickhart, Derek M
,
Billis, Konstantinos
,
Chow, William
,
Eory, Lel
,
Finlayson, Heather A
,
Flicek, Paul
,
Girón, Carlos G
,
Griffin, Darren K
,
H
Journal:
GigaScience
Year:
2020
File:
PDF, 2.43 MB
Your tags:
2020
13
The democratization of bioinformatics: A software engineering perspective
Lawlor, Brendan
,
Sleator, Roy D
Journal:
GigaScience
Year:
2020
File:
PDF, 325 KB
Your tags:
2020
14
CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems
Padilha, Victor A
,
Alkhnbashi, Omer S
,
Shah, Shiraz A
,
de Carvalho, André C P L F
,
Backofen, Rolf
Journal:
GigaScience
Year:
2020
File:
PDF, 754 KB
Your tags:
2020
15
Reduced chromatin accessibility underlies gene expression differences in homologous chromosome arms of diploid Aegilops tauschii and hexaploid wheat
Lu, Fu-Hao
,
McKenzie, Neil
,
Gardiner, Laura-Jayne
,
Luo, Ming-Cheng
,
Hall, Anthony
,
Bevan, Michael W
Journal:
GigaScience
Year:
2020
File:
PDF, 5.12 MB
Your tags:
2020
16
Bioentity2vec: Attribute- and behavior-driven representation for predicting multi-type relationships between bioentities
Guo, Zhen-Hao
,
You, Zhu-Hong
,
Wang, Yan-Bin
,
Huang, De-Shuang
,
Yi, Hai-Cheng
,
Chen, Zhan-Heng
Journal:
GigaScience
Year:
2020
File:
PDF, 4.69 MB
Your tags:
2020
17
CandiMeth: Powerful yet simple visualization and quantification of DNA methylation at candidate genes
Thursby, Sara-Jayne
,
Lobo, Darin K
,
Pentieva, Kristina
,
Zhang, Shu-Dong
,
Irwin, Rachelle E
,
Walsh, Colum P
Journal:
GigaScience
Year:
2020
File:
PDF, 5.24 MB
Your tags:
2020
18
Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American Fundulus killifish
Johnson, Lisa K
,
Sahasrabudhe, Ruta
,
Gill, James Anthony
,
Roach, Jennifer L
,
Froenicke, Lutz
,
Brown, C Titus
,
Whitehead, Andrew
Journal:
GigaScience
Year:
2020
File:
PDF, 1.16 MB
Your tags:
2020
19
Corrigendum to: Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function
Reddington, Kate
,
Eccles, David
,
O'Grady, Justin
,
Drown, Devin M
,
Hansen, Lars Hestbjerg
,
Nielsen, Tue Kjærgaard
,
Ducluzeau, Anne-Lise
,
Leggett, Richard M
,
Heavens, Darren
,
Peel, Ned
,
Snutch, Terranc
Journal:
GigaScience
Year:
2020
File:
PDF, 201 KB
Your tags:
2020
20
Watchdog 2.0: New developments for reusability, reproducibility, and workflow execution
Kluge, Michael
,
Friedl, Marie-Sophie
,
Menzel, Amrei L
,
Friedel, Caroline C
Journal:
GigaScience
Year:
2020
File:
PDF, 1.84 MB
Your tags:
2020
21
Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function
Reddington, Kate
,
Eccles, David
,
O'Grady, Justin
,
Drown, Devin M
,
Hansen, Lars Hestbjerg
,
Nielsen, Tue Kjærgaard
,
Ducluzeau, Anne-Lise
,
Leggett, Richard M
,
Heavens, Darren
,
Peel, Ned
,
Snutch, Terranc
Journal:
GigaScience
Year:
2020
File:
PDF, 4.04 MB
Your tags:
2020
1
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