Volume 6; Issue 1

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Gut Pathogens
Volume 6; Issue 1

Gut Pathogens

Volume 6; Issue 1

1

Genome sequence and comparative analysis of aVibrio choleraeO139 strain E306 isolated from a cholera case in China

Yi, Yong, Lu, Na, Liu, Fei, Li, Jing, Zhang, Ruifen, Jia, Liping, Jing, Hua, Xia, Hu, Yang, Yi, Zhu, Baoli, Hu, Yongfei, Cui, Yan

Journal:

Year:

2014

Language:

english

File:

PDF, 745 KB

english, 2014

2

Variations in motility and biofilm formation ofSalmonella entericaserovar Typhi

Kalai Chelvam, Kalaivani, Chai, Lay, Thong, Kwai

Journal:

Year:

2014

Language:

english

File:

PDF, 468 KB

english, 2014

3

Prevalence of antibiotic resistance in lactic acid bacteria isolated from the faeces of broiler chicken in Malaysia

Shazali, Nurhazirah, Foo, Hooi, Loh, Teck, Choe, Di, Abdul Rahim, Raha

Journal:

Year:

2014

Language:

english

File:

PDF, 196 KB

english, 2014

4

Helicobacter pyloriantibody patterns in Germany: a cross-sectional population study

Michel, Angelika, Pawlita, Michael, Boeing, Heiner, Gissmann, Lutz, Waterboer, Tim

Journal:

Year:

2014

Language:

english

File:

PDF, 624 KB

english, 2014

5

Detection, identification and quantification ofCampylobacter jejuni,coliandlariin food matrices all at once using multiplex qPCR

Vondrakova, Lucie, Pazlarova, Jarmila, Demnerova, Katerina

Journal:

Year:

2014

Language:

english

File:

PDF, 237 KB

english, 2014

6

Comparison of phenotypic methods for the detection of carbapenem non-susceptibleEnterobacteriaceae

Bartolini, Andrea, Frasson, Ilaria, Cavallaro, Antonietta, Richter, Sara N, Palù, Giorgio

Journal:

Year:

2014

Language:

english

File:

PDF, 242 KB

english, 2014

7

A novel enzyme-linked immunosorbent assay for detection ofEscherichia coliO157:H7 using immunomagnetic and beacon gold nanoparticles

Shen, Zhiqiang, Hou, Nannan, Jin, Min, Qiu, Zhigang, Wang, Jingfeng, Zhang, Bin, Wang, Xinwei, Wang, Jie, Zhou, Dongsheng, Li, Junwen

Journal:

Year:

2014

Language:

english

File:

PDF, 578 KB

english, 2014

8

Analysis of the role of theCronobacter sakazakiiProP homologues in osmotolerance

Feeney, Audrey, Johnston, Christopher D, Govender, Rodney, O’Mahony, Jim, Coffey, Aidan, Sleator, Roy D

Journal:

Year:

2014

Language:

english

File:

PDF, 300 KB

english, 2014

9

The impact of serine protease HtrA in apoptosis, intestinal immune responses and extra-intestinal histopathology duringCampylobacter jejuniinfection of infant mice

Heimesaat, Markus M, Fischer, André, Alutis, Marie, Grundmann, Ursula, Boehm, Manja, Tegtmeyer, Nicole, Göbel, Ulf B, Kühl, Anja A, Bereswill, Stefan, Backert, Steffen

Journal:

Year:

2014

Language:

english

File:

PDF, 1.11 MB

english, 2014

10

Update on the pathogenic potential and treatment options forBlastocystissp

Roberts, Tamalee, Stark, Damien, Harkness, John, Ellis, John

Journal:

Year:

2014

Language:

english

File:

PDF, 339 KB

english, 2014

11

The impact of Toll-like-receptor-9 on intestinal microbiota composition and extra-intestinal sequelae in experimentalToxoplasma gondiiinduced ileitis

Bereswill, Stefan, Kühl, Anja A, Alutis, Marie, Fischer, André, Möhle, Luisa, Struck, Daniela, Liesenfeld, Oliver, Göbel, Ulf B, Dunay, Ildikò R, Heimesaat, Markus M

Journal:

Year:

2014

Language:

english

File:

PDF, 820 KB

english, 2014

12

Genomic characterization of aHelicobacter pyloriisolate from a patient with gastric cancer in China

You, Yuanhai, Liu, Lin, Zhang, Maojun, Zhu, Yuanfang, He, Lihua, Li, Dongfang, Zhang, Jianzhong

Journal:

Year:

2014

Language:

english

File:

PDF, 672 KB

english, 2014

13

Draft genome sequences of the type strains ofShigella flexneriheld at Public Health England: comparison of classical phenotypic and novel molecular assays with whole genome sequence

Ashton, Philip M, Baker, Kate S, Gentle, Amy, Wooldridge, David J, Thomson, Nicholas R, Dallman, Timothy J, Jenkins, Claire

Journal:

Year:

2014

Language:

english

File:

PDF, 201 KB

english, 2014

14

Genome sequencing, annotation and analysis ofSalmonella entericasub speciessalamaestrain DMA-1

Sathyabama, Sathyaseelan, Kaur, Gurwinder, Arora, Amit, Verma, Sheenam, Mubin, Nida, Mayilraj, Shanmugam, Agrewala, Javed N

Journal:

Year:

2014

Language:

english

File:

PDF, 605 KB

english, 2014

15

Detection and molecular analysis ofCampylobacter ureolyticusin domestic animals

Koziel, Monika, Corcoran, Gerard D, Sleator, Roy D, Lucey, Brigid

Journal:

Year:

2014

Language:

english

File:

PDF, 341 KB

english, 2014

16

The interplay betweenCampylobacterandHelicobacterspecies and other gastrointestinal microbiota of commercial broiler chickens

Nadeem O Kaakoush,Nidhi Sodhi,Jeremy W Chenu,Julian M Cox…

Journal:

Year:

2014

Language:

english

File:

PDF, 367 KB

english, 2014

17

Role ofCampylobacter jejunigamma-glutamyl transpeptidase on epithelial cell apoptosis and lymphocyte proliferation

Pauline Floch,Vincent Pey,Michel Castroviejo,Jean William Dupuy…

Journal:

Year:

2014

Language:

english

File:

PDF, 882 KB

english, 2014

18

Genotypes and virulence in serotype K2Klebsiella pneumoniaefrom liver abscess and non-infectious carriers in Hong Kong, Singapore and Taiwan

Jung-Chung Lin,Tse Hsien Koh,Nelson Lee,Chang-Phone Fung…

Journal:

Year:

2014

Language:

english

File:

PDF, 268 KB

english, 2014

19

Inhibitory activity of postbiotic produced by strains ofLactobacillus plantarumusing reconstituted media supplemented with inulin

Karwan Yassen Kareem,Foo Hooi Ling,Loh Teck Chwen,Ooi May Foong…

Journal:

Year:

2014

Language:

english

File:

PDF, 374 KB

english, 2014

20

Human enteroendocrine cell responses to infection withChlamydia trachomatis: a microarray study

Aldona Dlugosz,Sandra Muschiol,Katherina Zakikhany,Ghazaleh Assadi…

Journal:

Year:

2014

Language:

english

File:

PDF, 480 KB

english, 2014

21

The murine appendiceal microbiome is altered in spontaneous colitis and its pathological progression

Sultan Alkadhi,Dale Kunde,Rajkumar Cheluvappa,Sarron Randall-Demllo…

Journal:

Year:

2014

Language:

english

File:

PDF, 3.79 MB

english, 2014

22

Co-occurrence of driver and passenger bacteria in human colorectal cancer

Jiawei Geng,Qingfang Song,Xiaodan Tang,Xiao Liang,Hong Fan…

Journal:

Year:

2014

Language:

english

File:

PDF, 430 KB

english, 2014

23

Whole-genome sequencing of clarithromycin resistantHelicobacter pyloricharacterizes unidentified variants of multidrug resistant efflux pump genes

Akira Iwamoto,Toshihito Tanahashi,Rina Okada,Yukio Yoshida…

Journal:

Year:

2014

Language:

english

File:

PDF, 865 KB

english, 2014

24

Genome sequencing, annotation and comparative genomic analysis ofShigella dysenteriaestrain SD1D

Gurwinder Kaur,Sathyaseelan Sathyabama,Amit Arora,Sheenam Verma…

Journal:

Year:

2014

Language:

english

File:

PDF, 1.43 MB

english, 2014

25

Clinical pilot study: efficacy of triple antibiotic therapy inBlastocystispositive irritable bowel syndrome patients

Robyn Nagel,Helle Bielefeldt-Ohmann,Rebecca Traub

Journal:

Year:

2014

Language:

english

File:

PDF, 253 KB

english, 2014

26

Whole-genome sequence assembly ofPediococcus pentosaceusLI05 (CGMCC 7049) from the human gastrointestinal tract and comparative analysis with representative sequences from three food-borne strains

Long-Xian Lv,Yu-Dong Li,Xin-Jun Hu,Hai-Yan Shi,Lan-Juan Li

Journal:

Year:

2014

Language:

english

File:

PDF, 928 KB

english, 2014

27

Synergistic effects ofBifidobacterium thermophilumRBL67 and selected prebiotics on inhibition ofSalmonellacolonization in the swine proximal colon PolyFermS model

Tanner, Sabine, Chassard, Christophe, Zihler Berner, Annina, Lacroix, Christophe

Journal:

Year:

2014

Language:

english

File:

PDF, 832 KB

english, 2014

28

Quantitative evaluation of fungi of the genusCandidain the feces of adult patients with type 1 and 2 diabetes - a pilot study

Gosiewski, Tomasz, Salamon, Dominika, Szopa, Magdalena, Sroka, Agnieszka, Malecki, Maciej T, Bulanda, Malgorzata

Journal:

Year:

2014

Language:

english

File:

PDF, 379 KB

english, 2014

29

Probiotics and virulent human rotavirus modulate the transplanted human gut microbiota in gnotobiotic pigs

Zhang, Husen, Wang, Haifeng, Shepherd, Megan, Wen, Ke, Li, Guohua, Yang, Xingdong, Kocher, Jacob, Giri-Rachman, Ernawati, Dickerman, Allan, Settlage, Robert, Yuan, Lijuan

Journal:

Year:

2014

Language:

english

File:

PDF, 672 KB

english, 2014

30

Phase-variable restriction/modification systems are required forHelicobacter pyloricolonization

Gauntlett, Jonathan C, Nilsson, Hans-Olof, Fulurija, Alma, Marshall, Barry J, Benghezal, Mohammed

Journal:

Year:

2014

Language:

english

File:

PDF, 395 KB

english, 2014

31

Whole genome sequence and comparative genomic analysis of multidrug-resistantStaphylococcus capitissubsp.urealyticusstrain LNZR-1

Li, Xiaoxia, Lei, Min, Song, Yanli, Gong, Kunwei, Li, Ling, Liang, Hongyan, Jiang, Xiaofeng

Journal:

Year:

2014

Language:

english

File:

PDF, 2.07 MB

english, 2014

32

Fine tuning of virulence regulatory pathways in enteric bacteria in response to varying bile and oxygen concentrations in the gastrointestinal tract

Sengupta, Chirantana, Ray, Sreejana, Chowdhury, Rukhsana

Journal:

Year:

2014

Language:

english

File:

PDF, 1.19 MB

english, 2014

33

The role of theCronobacter sakazakiiProP C-terminal coiled coil domain in osmotolerance

Feeney, Audrey, Johnston, Christopher D, Lucid, Alan, O’Mahony, Jim, Coffey, Aidan, Lucey, Brigid, Sleator, Roy D

Journal:

Year:

2014

Language:

english

File:

PDF, 1.10 MB

english, 2014

34

Correlation between the genomico454-nlpDregion polymorphisms, virulence gene equipment and phylogenetic group of extraintestinalEscherichia coli(ExPEC) enables pathotyping irrespective of host, disease and source of isolation

Ewers, Christa, Dematheis, Flavia, Singamaneni, Haritha, Nandanwar, Nishant, Fruth, Angelika, Diehl, Ines, Semmler, Torsten, Wieler, Lothar H

Journal:

Year:

2014

Language:

english

File:

PDF, 1.78 MB

english, 2014

35

Genome sequencing and genomic characterization of a tigecycline-resistantKlebsiella pneumoniaestrain isolated from the bile samples of a cholangiocarcinoma patient

Zheng, Beiwen, Li, Ang, Jiang, Xiawei, Hu, Xinjun, Yao, Jian, Zhao, Lina, Ji, Jinru, Ye, Min, Xiao, Yonghong, Li, Lanjuan

Journal:

Year:

2014

Language:

english

File:

PDF, 1.01 MB

english, 2014

36

Association betweenHelicobacter pylorigenotypes and severity of chronic gastritis, peptic ulcer disease and gastric mucosal interleukin-8 levels: Evidence from a study in the Middle East

Siddique, Iqbal, Al-Qabandi, Asmaa, Al-Ali, Jaber, Alazmi, Waleed, Memon, Anjum, Mustafa, Abu, Junaid, Thamradeen A

Journal:

Year:

2014

Language:

english

File:

PDF, 511 KB

english, 2014

37

Extremely lowHelicobacter pyloriprevalence in North Sulawesi, Indonesia and identification of a Maori-tribe type strain: a cross sectional study

Miftahussurur, Muhammad, Tuda, Josef, Suzuki, Rumiko, Kido, Yasutoshi, Kawamoto, Fumihiko, Matsuda, Miyuki, Tantular, Indah S, Pusarawati, Suhintam, Nasronudin, ᅟ, Harijanto, Paul N, Yamaoka, Yoshio

Journal:

Year:

2014

Language:

english

File:

PDF, 939 KB

english, 2014

38

Transcript changes inVibrio choleraein response to salt stress

Fu, Xiuping, Liang, Weili, Du, Pengcheng, Yan, Meiying, Kan, Biao

Journal:

Year:

2014

Language:

english

File:

PDF, 1.04 MB

english, 2014

39

Genome sequence of type strain ofStaphylococcus aureussubsp.aureus

Kim, Bong-Soo, Yi, Hana, Chun, Jongsik, Cha, Chang-Jun

Journal:

Year:

2014

Language:

english

File:

PDF, 590 KB

english, 2014

40

The genome ofBifidobacterium pseudocatenulatumIPLA 36007, a human intestinal strain with isoflavone-activation activity

Alegría, Ángel, Delgado, Susana, Guadamuro, Lucía, Flórez, Ana, Felis, Giovanna E, Torriani, Sandra, Mayo, Baltasar

Journal:

Year:

2014

Language:

english

File:

PDF, 1.15 MB

english, 2014

41

Characterization of bacterial community shift in human Ulcerative Colitis patients revealed by Illumina based 16S rRNA gene amplicon sequencing

Walujkar, Sandeep A, Dhotre, Dhiraj P, Marathe, Nachiket P, Lawate, Parimal S, Bharadwaj, Renu S, Shouche, Yogesh S

Journal:

Year:

2014

Language:

english

File:

PDF, 890 KB

english, 2014

42

Gene clusters ofHafnia alveistrain FB1 important in survival and pathogenesis: a draft genome perspective

Tan, Jia-Yi, Yin, Wai-Fong, Chan, Kok-Gan

Journal:

Year:

2014

Language:

english

File:

PDF, 1.73 MB

english, 2014

43

Genome sequencing of multidrug resistant novelClostridiumsp. BL8 reveals its potential for pathogenicity

Marathe, Nachiket, Shetty, Sudarshan, Lanjekar, Vikram B, Rasane, Mandar, Ranade, Dilip R, Shouche, Yogesh S

Journal:

Year:

2014

Language:

english

File:

PDF, 433 KB

english, 2014

44

A draft genome of Escherichia coli sequence type 127 strain 2009-46

Darling, Aaron E, McKinnon, Jessica, Worden, Paul, Santos, Jerran, Charles, Ian G, Chowdhury, Piklu, Djordjevic, Steven P

Journal:

Year:

2014

Language:

english

File:

PDF, 1.19 MB

english, 2014

45

Anti-inflammatory effects ofLactococcus lactisNCDO 2118 during the remission period of chemically induced colitis

Luerce, Tessalia, Gomes-Santos, Ana, Rocha, Clarissa, Moreira, Thais, Cruz, Déborah, Lemos, Luísa, Sousa, Adna, Pereira, Vanessa, de Azevedo, Marcela, Moraes, Kátia, Cara, Denise, LeBlanc, Jean, Azeve

Journal:

Year:

2014

Language:

english

File:

PDF, 1.34 MB

english, 2014

46

The genome of Clostridium difficile 5.3

Darling, Aaron E, Worden, Paul, Chapman, Toni A, Chowdhury, Piklu, Charles, Ian G, Djordjevic, Steven P

Journal:

Year:

2014

Language:

english

File:

PDF, 822 KB

english, 2014

47

Erratum to: Comparing the genomes ofHelicobacter pyloriclinical strain UM032 and mice-adapted derivatives

Yalda Khosravi,Vellaya Rehvathy,Wei Yee Wee,Susana Wang,Primo Baybayan…

Journal:

Year:

2014

Language:

english

File:

PDF, 312 KB

english, 2014

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