Volume 52; Issue 1.2

IBM Journal of Research and Development

Volume 52; Issue 1.2

1

Massively parallel molecular dynamics simulations of lysozyme unfolding

Zhou, R., Eleftheriou, M., Hon, C.-C., Germain, R. S., Royyuru, A. K., Berne, B. J.

Journal:

IBM Journal of Research and Development

Year:

2008

Language:

english

File:

PDF, 1.17 MB

english, 2008

2

Identifying, tabulating, and analyzing contacts between branched neuron morphologies

Kozloski, J., Sfyrakis, K., Hill, S., Schurmann, F., Peck, C., Markram, H.

Journal:

IBM Journal of Research and Development

Year:

2008

Language:

english

File:

PDF, 492 KB

english, 2008

3

Scaling climate simulation applications on the IBM Blue Gene/L system

Dennis, J. M., Tufo, H. M.

Journal:

IBM Journal of Research and Development

Year:

2008

Language:

english

File:

PDF, 759 KB

english, 2008

4

Terascale turbulence computation using the FLASH3 application framework on the IBM Blue Gene/L system

Fisher, R. T., Kadanoff, L. P., Lamb, D. Q., Dubey, A., Plewa, T., Calder, A., Cattaneo, F., Constantin, P., Foster, I., Papka, M. E., Abarzhi, S. I., Asida, S. M., Rich, P. M., Glendenin, C. C., Anty

Journal:

IBM Journal of Research and Development

Year:

2008

Language:

english

File:

PDF, 660 KB

english, 2008

5

Blue Matter: Scaling of N-body simulations to one atom per node

Fitch, B. G., Rayshubskiy, A., Eleftheriou, M., Ward, T. J. C., Giampapa, M. E., Pitman, M. C., Pitera, J. W., Swope, W. C., Germain, R. S.

Journal:

IBM Journal of Research and Development

Year:

2008

Language:

english

File:

PDF, 470 KB

english, 2008

6

Scalable molecular dynamics with NAMD on the IBM Blue Gene/L system

Kumar, S., Huang, C., Zheng, G., Bohm, E., Bhatele, A., Phillips, J. C., Yu, H., Kale, L. V.

Journal:

IBM Journal of Research and Development

Year:

2008

Language:

english

File:

PDF, 729 KB

english, 2008

7

Massively parallel quantum chromodynamics

Vranas, P., Blumrich, M. A., Chen, D., Gara, A., Giampapa, M. E., Heidelberger, P., Salapura, V., Sexton, J. C., Soltz, R., Bhanot, G.

Journal:

IBM Journal of Research and Development

Year:

2008

Language:

english

File:

PDF, 161 KB

english, 2008

8

A massively parallel implementation of the common azimuth pre-stack depth migration

Calandra, H., Bothorel, F., Vezolle, P.

Journal:

IBM Journal of Research and Development

Year:

2008

Language:

english

File:

PDF, 357 KB

english, 2008

9

Fine-grained parallelization of the Car-Parrinello ab initio molecular dynamics method on the IBM Blue Gene/L supercomputer

Bohm, E., Bhatele, A., Kale, L. V., Tuckerman, M. E., Kumar, S., Gunnels, J. A., Martyna, G. J.

Journal:

IBM Journal of Research and Development

Year:

2008

Language:

english

File:

PDF, 457 KB

english, 2008

10

Ligand discovery on massively parallel systems

Shave, S. R., Taylor, P., Walkinshaw, M., Smith, L., Hardy, J., Trew, A.

Journal:

IBM Journal of Research and Development

Year:

2008

Language:

english

File:

PDF, 247 KB

english, 2008

11

Advances in Rosetta protein structure prediction on massively parallel systems

Raman, S., Qian, B., Baker, D., Walker, R. C.

Journal:

IBM Journal of Research and Development

Year:

2008

Language:

english

File:

PDF, 391 KB

english, 2008

12

Massively parallel electrical-conductivity imaging of hydrocarbons using the IBM Blue Gene/L supercomputer

Commer, M., Newman, G. A., Carazzone, J. J., Dickens, T. A., Green, K. E., Wahrmund, L. A., Willen, D. E., Shiu, J.

Journal:

IBM Journal of Research and Development

Year:

2008

Language:

english

File:

PDF, 1.60 MB

english, 2008

13

Preface

Journal:

IBM Journal of Research and Development

Year:

2008

Language:

english

File:

PDF, 52 KB

english, 2008