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51

The role of ontologies in biological and biomedical research: a functional perspective

Hoehndorf, R., Schofield, P. N., Gkoutos, G. V.

Journal:

Briefings in Bioinformatics

Year:

2015

Language:

english

File:

PDF, 421 KB

english, 2015

52

The Units Ontology: a tool for integrating units of measurement in science

Gkoutos, G. V., Schofield, P. N., Hoehndorf, R.

Journal:

Year:

2012

Language:

english

File:

PDF, 147 KB

english, 2012

53

Type 1 diabetes mellitus and risk of incident epilepsy: a population-based, open-cohort study

Dafoulas, George E., Toulis, Konstantinos A., Mccorry, Dougall, Kumarendran, Balachadran, Thomas, G. Neil, Willis, Brian H., Gokhale, Krishna, Gkoutos, George, Narendran, Parth, Nirantharakumar, Krish

Journal:

Year:

2017

Language:

english

File:

PDF, 258 KB

english, 2017

54

DermO; an ontology for the description of dermatologic disease

Fisher, Hannah M., Hoehndorf, Robert, Bazelato, Bruno S., Dadras, Soheil S., King, Lloyd E., Gkoutos, Georgios V., Sundberg, John P., Schofield, Paul N.

Journal:

Journal of Biomedical Semantics

Year:

2016

Language:

english

File:

PDF, 1.48 MB

english, 2016

55

The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

Hoehndorf, Robert, Alshahrani, Mona, Gkoutos, Georgios V., Gosline, George, Groom, Quentin, Hamann, Thomas, Kattge, Jens, de Oliveira, Sylvia Mota, Schmidt, Marco, Sierra, Soraya, Smets, Erik, Vos, Ru

Journal:

Journal of Biomedical Semantics

Year:

2016

Language:

english

File:

PDF, 700 KB

english, 2016

56

The anatomy of phenotype ontologies: principles, properties and applications

Gkoutos, Georgios V., Schofield, Paul N., Hoehndorf, Robert

Journal:

Briefings in Bioinformatics

Year:

2017

Language:

english

File:

PDF, 477 KB

english, 2017

57

Using AberOWL for fast and scalable reasoning over BioPortal ontologies

Luke Slater,Georgios V. Gkoutos,Paul N. Schofield…

Journal:

Journal of Biomedical Semantics

Year:

2016

Language:

english

File:

PDF, 675 KB

english, 2016

58

Integrating phenotype ontologies with PhenomeNET

Rodríguez-García, Miguel Ángel, Gkoutos, Georgios V., Schofield, Paul N., Hoehndorf, Robert

Journal:

Journal of Biomedical Semantics

Year:

2017

Language:

english

File:

PDF, 721 KB

english, 2017

59

Semantic prioritization of novel causative genomic variants

Boudellioua, Imane, Mahamad Razali, Rozaimi B., Kulmanov, Maxat, Hashish, Yasmeen, Bajic, Vladimir B., Goncalves-Serra, Eva, Schoenmakers, Nadia, Gkoutos, Georgios V., Schofield, Paul N., Hoehndorf, R

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.19 MB

english, 2017

60

Interoperability between Biomedical Ontologies through Relation Expansion, Upper-Level Ontologies and Automatic Reasoning

Hoehndorf, Robert, Dumontier, Michel, Oellrich, Anika, Rebholz-Schuhmann, Dietrich, Schofield, Paul N., Gkoutos, Georgios V., Androulakis, Ioannis P.

Journal:

Year:

2011

Language:

english

File:

PDF, 387 KB

english, 2011

61

Improving Disease Gene Prioritization by Comparing the Semantic Similarity of Phenotypes in Mice with Those of Human Diseases

Oellrich, Anika, Hoehndorf, Robert, Gkoutos, Georgios V., Rebholz-Schuhmann, Dietrich, Schuelke, Markus

Journal:

Year:

2012

Language:

english

File:

PDF, 2.10 MB

english, 2012

62

Systematic Analysis of Experimental Phenotype Data Reveals Gene Functions

Hoehndorf, Robert, Hardy, Nigel W., Osumi-Sutherland, David, Tweedie, Susan, Schofield, Paul N., Gkoutos, Georgios V., Torkamani, Ali

Journal:

Year:

2013

Language:

english

File:

PDF, 1.33 MB

english, 2013

63

Evaluating the Good Ontology Design Guideline (GoodOD) with the Ontology Quality Requirements and Evaluation Method and Metrics (OQuaRE)

Duque-Ramos, Astrid, Boeker, Martin, Jansen, Ludger, Schulz, Stefan, Iniesta, Miguela, Fernández-Breis, Jesualdo Tomás, Gkoutos, Georgios V.

Journal:

Year:

2014

Language:

english

File:

PDF, 1018 KB

english, 2014

64

A Geospatial Information Grid Framework for Geological Survey

Wu, Liang, Xue, Lei, Li, Chaoling, Lv, Xia, Chen, Zhanlong, Guo, Mingqiang, Xie, Zhong, Gkoutos, Georgios V.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.74 MB

english, 2015

65

Minimally inconsistent reasoning in Semantic Web

Zhang, Xiaowang, Gkoutos, Georgios V.

Journal:

Year:

2017

Language:

english

File:

PDF, 2.61 MB

english, 2017

66

Ontology-based validation and identification of regulatory phenotypes

Kulmanov, Maxat, Schofield, Paul N, Gkoutos, Georgios V, Hoehndorf, Robert

Journal:

Year:

2018

Language:

english

File:

PDF, 657 KB

english, 2018

67

A Review of Current Standards and the Evolution of Histopathology Nomenclature for Laboratory Animals

Elmore, Susan A, Cardiff, Robert, Cesta, Mark F, Gkoutos, Georgios V, Hoehndorf, Robert, Keenan, Charlotte M, McKerlie, Colin, Schofield, Paul N, Sundberg, John P, Ward, Jerrold M

Journal:

Year:

2018

Language:

english

File:

PDF, 1.84 MB

english, 2018

68

Utility of HbA 1c assessment in people with diabetes awaiting liver transplantation

Bhattacharjee, D., Vracar, S., Round, R. A., Nightingale, P. G., Williams, J. A., Gkoutos, G. V., Stratton, I. M., Parker, R., Luzio, S. D., Roberts, G. A., Webber, J., Ghosh, S., Manley, S. E.

Journal:

Diabetic Medicine

Year:

2018

Language:

english

File:

PDF, 735 KB

english, 2018

69

OligoPVP: Phenotype-driven analysis of individual genomic information to prioritize oligogenic disease variants

Boudellioua, Imane, Kulmanov, Maxat, Schofield, Paul N., Gkoutos, Georgios V., Hoehndorf, Robert

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 1.05 MB

english, 2018

70

P164 Mucosal healing (MH) assessed with PICaSSO (Paddington International Virtual ChromoendoScopy ScOre) and probe Confocal Laser Endomicroscopy (pCLE) do not reflect histological normalisation using the ECAP (Extent Chronicity Activity Plus) score

Iacucci, M, Cannatelli, R, Gui, S X, Lethebe, B C, Bazarova, A, Gkoutos, G, Kaplan, G, Panaccione, R, Kiesslich, R, Ghosh, S

Journal:

Journal of Crohn's and Colitis

Year:

2019

Language:

english

File:

PDF, 155 KB

english, 2019

71

Risk of incident circulatory disease in patients treated for differentiated thyroid carcinoma with no history of cardiovascular disease

Toulis, Konstantinos A., Viola, David, Gkoutos, George, Keerthy, Deepiksana, Boelaert, Kristien, Nirantharakumar, Krishnarajah

Journal:

Clinical Endocrinology

Year:

2019

Language:

english

File:

PDF, 329 KB

english, 2019

72

Annotating and detecting phenotypic information for chronic obstructive pulmonary disease

Ju, Meizhi, Short, Andrea D, Thompson, Paul, Bakerly, Nawar Diar, Gkoutos, Georgios V, Tsaprouni, Loukia, Ananiadou, Sophia

Journal:

Year:

2019

Language:

english

File:

PDF, 534 KB

english, 2019

73

Uberon: towards a comprehensive multi-species anatomy ontology

Haendel, Melissa, Gkoutos, Georgios, Lewis, Suzanna, Mungall, Chris

Journal:

Bioentrepreneur

Year:

2009

Language:

english

File:

PDF, 12 KB

english, 2009

74

Development and validation of multivariable prediction models of remission, recovery, and quality of life outcomes in people with first episode psychosis: a machine learning approach

Leighton, Samuel P, Upthegrove, Rachel, Krishnadas, Rajeev, Benros, Michael E, Broome, Matthew R, Gkoutos, Georgios V, Liddle, Peter F, Singh, Swaran P, Everard, Linda, Jones, Peter B, Fowler, David,

Journal:

The Lancet Digital Health

Year:

2019

Language:

english

File:

PDF, 1.86 MB

english, 2019

75

899 A MULTICENTRE VALIDATION STUDY OF A NOVEL LOWER GASTROINTESTINAL BLEEDING (LGIB) SCORE-THE BIRMINGHAM (BHAM) SCORE

Smith, Samuel C., Bazarova, Alina, Ejenavi, Efe, Qurashi, Maria, Shivaji, Uday N., Harvey, Philip R., Slaney, Emma, McFarlane, Michael, Baker, Graham, Elnagar, Mohamed, Yuzari, Sarah, Gkoutos, Georgio

Journal:

Gastrointestinal Endoscopy

Year:

2019

Language:

english

File:

PDF, 343 KB

english, 2019

76

Sa1723 – Mucosal Healing Defined by Advanced Electronic Chromoendoscopy Picasso (Paddington International Virtual Chromoendoscopy Score) and Probe Confocal Laser Endomicroscopy Accurately Predict Histological Healing of Active Inflammation But Not Chronic Changes

Iacucci, Marietta, Cannatelli, Rosanna, Gui, Sean X., Lethebe, Brendan C., Bazarova, Alina, Gkoutos, Georgios, Kaplan, Gilaad, Panaccione, Remo, Kiesslich, Ralf, Ghosh, Subrata

Journal:

Gastroenterology

Year:

2019

Language:

english

File:

PDF, 264 KB

english, 2019

77

Uberon: towards a comprehensive multi-species anatomy ontology

Haendel, Melissa, Gkoutos, Georgios, Lewis, Suzanna, Mungall, Chris

Journal:

Bioentrepreneur

Year:

2009

File:

PDF, 12 KB

2009

78

Sa1723 – Mucosal Healing Defined by Advanced Electronic Chromoendoscopy Picasso (Paddington International Virtual Chromoendoscopy Score) and Probe Confocal Laser Endomicroscopy Accurately Predict Histological Healing of Active Inflammation But Not Chronic Changes

Iacucci, Marietta, Cannatelli, Rosanna, Gui, Sean X., Lethebe, Brendan C., Bazarova, Alina, Gkoutos, Georgios, Kaplan, Gilaad, Panaccione, Remo, Kiesslich, Ralf, Ghosh, Subrata

Journal:

Gastroenterology

Year:

2019

File:

PDF, 264 KB

2019

79

Sa1730 – The Histological Healing in Ulcerative Colitis Patients Can Be Predicted by the Combination of Fecal Calprotectin and Endoscopic Healing Assessed by Advanced Optical Enhancement Techniques

Cannatelli, Rosanna, Shivaji, Uday N., Smith, Samuel C., Zardo, Davide, Bazarova, Alina, Gkoutos, Georgios, Ghosh, Subrata, Iacucci, Marietta

Journal:

Gastroenterology

Year:

2019

Language:

english

File:

PDF, 315 KB

english, 2019

80

A Practical Guide to Assess the Reproducibility of Echocardiographic Measurements

Bunting, Karina V., Steeds, Richard P., Slater, Luke T., Rogers, Jennifer K., Gkoutos, Georgios V., Kotecha, Dipak

Journal:

Journal of the American Society of Echocardiography

Year:

2019

Language:

english

File:

PDF, 466 KB

english, 2019

81

P254 Re-defining the concept of endoscopic and histological healing by using electronic virtual chromoendoscopy and probe confocal endomicroscopy in ulcerative colitis

Iacucci, M, Cannatelli, R, Gui, S X, Lethebe, B C, Bazarova, A, Gkoutos, G, Kaplan, G, Panaccione, R, Kiesslich, R, Ghosh, S

Journal:

Journal of Crohn's and Colitis

Year:

2019

Language:

english

File:

PDF, 415 KB

english, 2019

82

P254 Re-defining the concept of endoscopic and histological healing by using electronic virtual chromoendoscopy and probe confocal endomicroscopy in ulcerative colitis

Iacucci, M, Cannatelli, R, Gui, S X, Lethebe, B C, Bazarova, A, Gkoutos, G, Kaplan, G, Panaccione, R, Kiesslich, R, Ghosh, S

Journal:

Journal of Crohn's and Colitis

Year:

2019

File:

PDF, 415 KB

2019

83

Ontology-based prediction of cancer driver genes

Althubaiti, Sara, Karwath, Andreas, Dallol, Ashraf, Noor, Adeeb, Alkhayyat, Shadi Salem, Alwassia, Rolina, Mineta, Katsuhiko, Gojobori, Takashi, Beggs, Andrew D., Schofield, Paul N., Gkoutos, Georgios

Journal:

Scientific Reports

Year:

2019

File:

PDF, 1.60 MB

2019

84

A multicentre development and validation study of a novel lower gastrointestinal bleeding score—The Birmingham Score

Smith, Samuel C. L., Bazarova, Alina, Ejenavi, Efe, Qurashi, Maria, Shivaji, Uday N., Harvey, Phil R., Slaney, Emma, McFarlane, Michael, Baker, Graham, Elnagar, Mohamed, Yuzari, Sarah, Gkoutos, Georgi

Journal:

International Journal of Colorectal Disease

Year:

2019

File:

PDF, 517 KB

2019

85

Machine learning for the detection of early immunological markers as predictors of multi-organ dysfunction

Bravo-Merodio, Laura, Acharjee, Animesh, Hazeldine, Jon, Bentley, Conor, Foster, Mark, Gkoutos, Georgios V., Lord, Janet M.

Journal:

Scientific Data

Year:

2019

File:

PDF, 3.26 MB

2019

86

Epidemiology, morbidity and mortality in BehÃ§etâs disease: a cohort study using The Health Improvement Network (THIN)

Thomas, Tom, Chandan, Joht Singh, Subramanian, Anuradhaa, Gokhale, Krishna, Gkoutos, George, Harper, Lorraine, Buckley, Christopher, Chandratre, Priyanka, Raza, Karim, Situnayake, Deva, Nirantharakuma

Journal:

Year:

2020

File:

PDF, 419 KB

2020

87

Violence-related knife injuries in a UK city; epidemiology and impact on secondary care resources

Malik, Nabeela S., Munoz, Beau, de Courcey, Cynthia, Imran, Rizwana, Lee, Kwang C., Chernbumroong, Saisakul, Bishop, Jonathan, Lord, Janet M., Gkoutos, George, Bowley, Douglas M., Foster, Mark A.

Journal:

EClinicalMedicine

Year:

2020

File:

PDF, 1.24 MB

2020

88

Assessment of endoscopic healing by using advanced technologies reflects histologic healing in ulcerative colitis

Iacucci, M, Cannatelli, R, Gui, X S, Zardo, D, Bazarova, A, Gkoutos, G, Lethebe, B C, Kaplan, G G, Panaccione, R, Kiesslich, R, Ghosh, S

Journal:

Journal of Crohn's and Colitis

Year:

2020

Language:

english

File:

PDF, 1021 KB

english, 2020

89

P005 Regulators of the guanylate cyclase pathway are potential novel markers of mucosal healing in IBD

Jeffery, L E, Shivaji, U N, Zardo, D, Acharjee, A, Nardone, O M, Smith, S C, Gkoutos, G, Visweswariah, S S, Ghosh, S, Iacucci, M

Journal:

Journal of Crohn's and Colitis

Year:

2020

File:

PDF, 86 KB

2020

90

Aging Neuro-Behavior Ontology

MartÃnez-Santiago, Fernando, GarcÃa-Viedma, M. Rosario, Williams, John A., Slater, Luke T., Gkoutos, Georgios V.

Journal:

Applied Ontology

Year:

2020

File:

PDF, 1.80 MB

2020

91

Sa1123 REGULATORS OF THE GUANYLATE CYCLASE PATHWAY ARE POTENTIAL NOVEL MARKERS OF MUCOSAL HEALING IN IBD

Jeffery, Louisa, Shivaji, Uday N., Zardo, Davide, Acharjee, Animesh, Smith, Samuel C., Nardone, Olga Maria, Gkoutos, Georgios, Visweswariah, Sandhya, Ghosh, Subrata, Iacucci, Marietta

Journal:

Gastroenterology

Year:

2020

File:

PDF, 302 KB

2020

92

Radiomic Analysis of Native T 1 Mapping Images Discriminates Between MYH7 and MYBPC3 -Related Hypertrophic Cardiomyopathy

Wang, Jie, Yang, Fuyao, Liu, Wentao, Sun, Jiayu, Han, Yuchi, Li, Dong, Gkoutos, Georgios V., Zhu, Yanjie, Chen, Yucheng

Journal:

Journal of Magnetic Resonance Imaging

Year:

2020

File:

PDF, 351 KB

2020

93

Fecal Calprotectin Thresholds to Predict Endoscopic Remission Using Advanced Optical Enhancement Techniques and Histological Remission in IBD Patients

Cannatelli, Rosanna, Bazarova, Alina, Zardo, Davide, Nardone, Olga Maria, Shivaji, Uday, Smith, Samuel Charles Lloyd, Gkoutos, Georgios, Ricci, Chiara, Gui, Xianyong Sean, Ghosh, Subrata, Iacucci, Mar

Journal:

Inflammatory Bowel Diseases

Year:

2020

File:

PDF, 229 KB

2020

94

Prevalence of admission plasma glucose in 'diabetes'Â or 'at risk' ranges in hospital emergencies with no prior diagnosis of diabetes by gender, age and ethnicity

Ghosh, Sandip, Manley, Susan E., Nightingale, Peter G., Williams, John A., Susarla, Radhika, AlonsoâPerez, Irene, Stratton, Irene M., Gkoutos, Georgios V., Webber, Jonathan, Luzio, Stephen D., Hanif

Journal:

Endocrinology, Diabetes & Metabolism

Year:

2020

File:

PDF, 1023 KB

2020

95

Data extraction for epidemiological research (DExtER): a novel tool for automated clinical epidemiology studies

Gokhale, Krishna Margadhamane, Chandan, Joht Singh, Toulis, Konstantinos, Gkoutos, Georgios, Tino, Peter, Nirantharakumar, Krishnarajah

Journal:

European Journal of Epidemiology

Year:

2020

File:

PDF, 793 KB

2020

96

Ethnicityâbased differences in the incident risk of allergic diseases and autoimmune disorders: a UKâbased retrospective cohort study of 4.4million participants

Subramanian, Anuradhaa, Adderley, Nicola J, Gkoutos, Georgios V., Gokhale, Krishna Margadhamane, Nirantharakumar, Krishnarajah, Krishna, Mamidipudi Thirumala

Journal:

Clinical & Experimental Allergy

Year:

2020

File:

PDF, 3.98 MB

2020

97

P297 Novel serum soluble markers of histological healing in ulcerative colitis

Nardone, O M, Jeffery, L, Bazarova, A, Acharjee, A, Gkoutos, G, Zardo, D, Shivaji, U N, Smith, S C, Ghosh, S, Iacucci, M

Journal:

Journal of Crohn's and Colitis

Year:

2020

File:

PDF, 86 KB

2020

98

Fractal Analysis: Prognostic Value of Left Ventricular Trabecular Complexity Cardiovascular MRI in Participants with Hypertrophic Cardiomyopathy

Wang, Jie, Li, Yuancheng, Yang, Fuyao, Bravo, Laura, Wan, Ke, Xu, Yuanwei, Cheng, Wei, Sun, Jiayu, Zhu, Yanjie, Zhu, Tingxi, Gkoutos, Georgios V., Han, Yuchi, Chen, Yucheng

Journal:

Year:

2020

File:

PDF, 890 KB

2020

99

[BMJ Publishing Group Ltd and British Cardiovascular Society British Cardiovascular Society Annual Conference âDigital Health Revolutionâ 3â5 June 2019 - ()] ACHD - 142âUpdate on familial thoracic aortic aneurysm disease in the 100,000 genomes project: space for discovery

Francis, Catherine, Jamshidi, Yalda, Gkoutos, George, Keavney, Bernard, Clift, Paul, Fowler, Tom

Year:

2019

File:

PDF, 468 KB

2019

100

[BMJ Publishing Group Ltd and British Society of Gastroenterology British Society of Gastroenterology, Annual General Meeting, 4â7 June 2018, Abstracts - ()] IBD - ADTU-05âGut microbial composition in the migrant south-asian IBD population in UK

Quraishi, Mohammed, Acharjee, Animesh, Bhala, Neeraj, Pathmakanthan, Shrikanth, Cooney, Rachel, Ghosh, Subrata, Gkoutos, Georgios, Beggs, Andrew, Rossiter, Amanda, Iqbal, Tariq

File:

PDF, 82 KB