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1

Rapid and accurate taxonomic classification of insect (class Insecta) cytochrome c oxidase subunit 1 (COI) DNA barcode sequences using a naïve Bayesian classifier

Porter, Teresita M., Gibson, Joel F., Shokralla, Shadi, Baird, Donald J., Golding, G. Brian, Hajibabaei, Mehrdad

Journal:

Molecular Ecology Resources

Year:

2014

Language:

english

File:

PDF, 386 KB

english, 2014

2

Cryptic species within cryptic moths: new species of Dunama Schaus (Notodontidae, Nystaleinae) in Costa Rica

Chacón, Isidro, Janzen, Daniel, Hallwachs, Winnie, Sullivan, James, Hajibabaei, Mehrdad

Journal:

Year:

2013

Language:

english

File:

PDF, 13.14 MB

english, 2013

3

A DNA Mini-Barcoding System for Authentication of Processed Fish Products

Shokralla, Shadi, Hellberg, Rosalee S., Handy, Sara M., King, Ian, Hajibabaei, Mehrdad

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 524 KB

english, 2015

4

Author Correction: DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient

Emilson, Caroline E., Thompson, Dean G., Venier, Lisa A., Porter, Teresita M., Swystun, Tom, Chartrand, Derek, Capell, Scott, Hajibabaei, Mehrdad

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 1.10 MB

english, 2018

5

Scaling up: A guide to high throughput genomic approaches for biodiversity analysis

Porter, Teresita M., Hajibabaei, Mehrdad

Journal:

Molecular Ecology

Year:

2018

Language:

english

File:

PDF, 612 KB

english, 2018

6

Improving the Performance of Water Distribution Networks Based on the Value Index in the System Dynamics Framework

Hajibabaei,, Nazif,, Sitzenfrei,

Journal:

Year:

2019

Language:

english

File:

PDF, 2.71 MB

english, 2019

7

A universal DNA mini-barcode for biodiversity analysis

Isabelle Meusnier, Gregory AC Singer, Jean-François Landry, Donal A Hickey, Paul DN Hebert, Mehrdad Hajibabaei

Journal:

Year:

2008

Language:

english

File:

PDF, 265 KB

english, 2008

8

Life cycle assessment of pipes and piping process in drinking water distribution networks to reduce environmental impact

Hajibabaei, Mohsen, Nazif, Sara, Tavanaei Sereshgi, Fatemeh

Journal:

Sustainable Cities and Society

Year:

2018

Language:

english

File:

PDF, 1.03 MB

english, 2018

9

Are plant species inherently harder to discriminate than animal species using DNA barcoding markers?

ARON J. FAZEKAS, PRASAD R. KESANAKURTI, KEVIN S. BURGESS, DIANA M. PERCY, SEAN W. GRAHAM, SPENCER C. H. BARRETT, STEVEN G. NEWMASTER, MEHRDAD HAJIBABAEI, BRIAN C. HUSBAND

Journal:

Molecular Ecology Resources

Year:

2009

Language:

english

File:

PDF, 1.01 MB

english, 2009

10

Instances of erroneous DNA barcoding of metazoan invertebrates: Are universal cox1 gene primers too “universal”?

Mioduchowska, Monika, Czyż, Michał Jan, Gołdyn, Bartłomiej, Kur, Jarosław, Sell, Jerzy, Hajibabaei, Mehrdad

Journal:

Year:

2018

Language:

english

File:

PDF, 1.48 MB

english, 2018

11

Tantalum Nitride Films Integrated with Transparent Conductive Oxide Substrates via Atomic Layer Deposition for Photoelectrochemical Water Splitting

Hajibabaei, Hamed, Zandi, Omid, Hamann, Thomas

Journal:

Chemical Science

Year:

2016

Language:

english

File:

PDF, 1.53 MB

english, 2016

12

Assessing Redundancy in Stormwater Structures Under Hydraulic Design

Hesarkazzazi, Sina, Hajibabaei, Mohsen, Reyes-Silva, Julian David, Krebs, Peter, Sitzenfrei, Robert

Journal:

Year:

2020

File:

PDF, 2.47 MB

2020

13

Biological identifications through DNA barcodes: the case of the Crustacea

Costa, Filipe O, deWaard, Jeremy R, Boutillier, James, Ratnasingham, Sujeevan, Dooh, Robert T, Hajibabaei, Mehrdad, Hebert, Paul DN

Journal:

Canadian Journal of Fisheries and Aquatic Sciences

Year:

2007

File:

PDF, 982 KB

2007

14

Identifying North American freshwater invertebrates using DNA barcodes: are existing COI sequence libraries fit for purpose?

Curry, Colin J., Gibson, Joel F., Shokralla, Shadi, Hajibabaei, Mehrdad, Baird, Donald J.

Journal:

Freshwater Science

Year:

2018

Language:

english

File:

PDF, 1.33 MB

english, 2018

15

GoFish: A versatile nested PCR strategy for environmental DNA assays for marine vertebrates

Stoeckle, Mark Y., Das Mishu, Mithun, Charlop-Powers, Zachary, Hajibabaei, Mehrdad

Journal:

Year:

2018

Language:

english

File:

PDF, 1.62 MB

english, 2018

16

Synthesis, characterization and antibacterial activity of imidazole-functionalized Ag/MIL-101(Cr)

Hajibabaei, Majid, Amini, Mostafa M., Zendehdel, Rezvan, Nasiri, Mohamad Javad, Peymani, Amir

Journal:

Journal of Porous Materials

Year:

2019

Language:

english

File:

PDF, 2.08 MB

english, 2019

17

DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments

Lanzén, Anders, Lekang, Katrine, Jonassen, Inge, Thompson, Eric M., Troedsson, Christofer, Hajibabaei, Mehrdad

Journal:

Year:

2017

Language:

english

File:

PDF, 5.86 MB

english, 2017

18

A striking new genus and species of tiger-moth (Lepidoptera: Erebidae, Arctiinae, Arctiini) from the Caribbean, with molecular and morphological analysis of its systematic placement

VINCENT, BENOIT, HAJIBABAEI, MEHRDAD, ROUGERIE, RODOLPHE

Journal:

Year:

2014

Language:

english

File:

PDF, 2.04 MB

english, 2014

19

Differences in the soil microbial community and carbon use efficiency following development of Vochysia guatemalensi s tree plantations in unproductive pastures in Costa Rica

Eaton, William D., McGee, Katie M., Donnelly, Robert, Lemenze, Alex, Karas, Olivia, Hajibabaei, Mehrdad

Journal:

Restoration Ecology

Year:

2019

Language:

english

File:

PDF, 1.20 MB

english, 2019

20

Automated high throughput animal CO1 metabarcode classification

Porter, Teresita M., Hajibabaei, Mehrdad

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 1.38 MB

english, 2018

21

Machine Learning the Band Gaps of ABX 3 Perovskites from Elemental Properties

Gladkikh, Vladislav, Kim, Dong Yeon, Hajibabaei, Amir, Jana, Atanu, Myung, Chang Woo, Kim, Kwang S.

Journal:

The Journal of Physical Chemistry C

Year:

2020

Language:

english

File:

PDF, 1.12 MB

english, 2020

22

Design and applicability of DNA arrays and DNA barcodes in biodiversity monitoring

Mehrdad Hajibabaei, Gregory AC Singer, Elizabeth L Clare, Paul DN Hebert

Journal:

Year:

2007

Language:

english

File:

PDF, 556 KB

english, 2007

23

Spatial patterns of plant diversity below-ground as revealed by DNA barcoding

PRASAD R. KESANAKURTI, ARON J. FAZEKAS, KEVIN S. BURGESS, DIANA M. PERCY, STEVEN G. NEWMASTER, SEAN W. GRAHAM, SPENCER C. H. BARRETT, MEHRDAD HAJIBABAEI, BRIAN C. HUSBAND

Journal:

Molecular Ecology

Year:

2011

Language:

english

File:

PDF, 423 KB

english, 2011

24

ChemInform Abstract: One-Pot Multicomponent Domino Synthesis of 4-Aminothiazole-2(3H)-thiones.

Hajibabaei, Khadijeh, Zali-Boeini, Hassan

Journal:

Year:

2015

File:

PDF, 18 KB

2015

25

A new way to contemplate Darwin's tangled bank: how DNA barcodes are reconnecting biodiversity science and biomonitoring

Hajibabaei, Mehrdad, Baird, Donald J., Fahner, Nicole A., Beiko, Robert, Golding, G. Brian

Journal:

Philosophical Transactions Biological Sciences

Year:

2016

Language:

english

File:

PDF, 1015 KB

english, 2016

26

Who’s there? – First morphological and DNA barcoding catalogue of the shallow Hawai’ian sponge fauna

Núñez Pons, Laura, Calcinai, Barbara, Gates, Ruth D., Hajibabaei, Mehrdad

Journal:

Year:

2017

Language:

english

File:

PDF, 63.15 MB

english, 2017

27

Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples

Hajibabaei, Mehrdad, Porter, Teresita M., Robinson, Chloe V., Baird, Donald J., Shokralla, Shadi, Wright, Michael T. G., Doi, Hideyuki

Journal:

Year:

2019

File:

PDF, 1.55 MB

2019

28

DNA barcoding of earthworms (Eisenia fetida/andrei complex) from 28 ecotoxicological test laboratories

Römbke, Jörg, Aira, Manuel, Backeljau, Thierry, Breugelmans, Karin, Domínguez, Jorge, Funke, Elisabeth, Graf, Nadin, Hajibabaei, Mehrdad, Pérez-Losada, Marcos, Porto, Pablo G., Schmelz, Rüdiger M., Vi

Journal:

Applied Soil Ecology

Year:

2015

Language:

english

File:

PDF, 627 KB

english, 2015

29

Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform

Shokralla, Shadi, Porter, Teresita M., Gibson, Joel F., Dobosz, Rafal, Janzen, Daniel H., Hallwachs, Winnie, Golding, G. Brian, Hajibabaei, Mehrdad

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.41 MB

english, 2015

30

Naphthenic Acid Mixtures from Oil Sands Process-Affected Water Enhance Differentiation of Mouse Embryonic Stem Cells and Affect Development of the Heart

Mohseni, Paria, Hahn, Noah A., Frank, Richard A., Hewitt, L. Mark, Hajibabaei, Mehrdad, Van Der Kraak, Glen

Journal:

Environmental Science & Technology

Year:

2015

Language:

english

File:

PDF, 2.54 MB

english, 2015

31

Integrative data helps the assessment of a butterfly within the Udranomia kikkawai species complex (Lepidoptera: Hesperiidae): Immature stages, natural history, and molecular evidence

Bächtold, Alexandra, Kaminski, Lucas A., Magaldi, Luiza M., Oliveira, Paulo S., Del-Claro, Kleber, Janzen, Daniel H., Burns, John M., Grishin, Nick, Hajibabaei, Mehrdad, Hallwachs, Winnie, Freitas, An

Journal:

Zoologischer Anzeiger - A Journal of Comparative Zoology

Year:

2017

Language:

english

File:

PDF, 1.78 MB

english, 2017

32

Using metagenomics to show the efficacy of forest restoration in the New Jersey Pine Barrens.

Eaton, William D., Shokralla, Shadi, McGee, Kathleen M., Hajibabaei, Mehrdad

Journal:

Year:

2017

Language:

english

File:

PDF, 505 KB

english, 2017

33

Over 2.5 million COI sequences in GenBank and growing

Porter, Teresita M., Hajibabaei, Mehrdad, Arthofer, Wolfgang

Journal:

Year:

2018

Language:

english

File:

PDF, 1.37 MB

english, 2018

34

DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics

Mehrdad Hajibabaei, Gregory A.C. Singer, Paul D.N. Hebert, Donal A. Hickey

Journal:

Trends in Genetics

Year:

2007

Language:

english

File:

PDF, 560 KB

english, 2007

35

Googling DNA sequences on the World Wide Web

Mehrdad Hajibabaei, Gregory AC Singer

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 237 KB

english, 2009

36

DNA barcodes for everyday life: Routine authentication of Natural Health Products

Lauren J. Wallace, Stephanie M.A.L. Boilard, Shannon H.C. Eagle, Jennifer L. Spall, Shadi Shokralla, Mehrdad Hajibabaei

Journal:

Food Research International

Year:

2012

Language:

english

File:

PDF, 265 KB

english, 2012

37

3-Amino-5-mercapto-1,2,4-triazole-functionalized Fe 3 O 4 magnetic nanocomposite as a green and efficient catalyst for synthesis of bis(indolyl)methane derivatives

Hajibabaei, Maryam, Senejani, Masumeh Abdoli, Shafiei, Fatemeh

Journal:

Applied Organometallic Chemistry

Year:

2020

Language:

english

File:

PDF, 12.96 MB

english, 2020

38

A minimalist barcode can identify a specimen whose DNA is degraded

MEHRDAD HAJIBABAEI, M. ALEX SMITH, DANIEL H. JANZEN, JOSEPHINE J. RODRIGUEZ, JAMES B. WHITFIELD, PAUL D. N. HEBERT

Journal:

Molecular Ecology Resources

Year:

2006

Language:

english

File:

PDF, 212 KB

english, 2006

39

Mitochondrial and nuclear phylogenetic analysis with Sanger and next-generation sequencing shows that, in Área de Conservación Guanacaste, northwestern Costa Rica, the skipper butterfly named Urbanus belli (family Hesperiidae) comprises three morphologically cryptic species

Bertrand, Claudia, Janzen, Daniel H, Hallwachs, Winnie, Burns, John M, Gibson, Joel F, Shokralla, Shadi, Hajibabaei, Mehrdad

Journal:

BMC Evolutionary Biology

Year:

2014

Language:

english

File:

PDF, 2.02 MB

english, 2014

40

From writing to reading the encyclopedia of life

Hebert, Paul D. N., Hollingsworth, Peter M., Hajibabaei, Mehrdad

Journal:

Philosophical Transactions Biological Sciences

Year:

2016

Language:

english

File:

PDF, 632 KB

english, 2016

41

Direct PCR amplification and sequencing of specimens' DNA from preservative ethanol

Shokralla, Shadi, Singer, Gregory, Hajibabaei, Mehrdad

Journal:

Year:

2010

Language:

english

File:

PDF, 557 KB

english, 2010

42

DNA metabarcoding reveals diverse diet of the three-spined stickleback in a coastal ecosystem

Jakubavičiūtė, Eglė, Bergström, Ulf, Eklöf, Johan S., Haenel, Quiterie, Bourlat, Sarah J., Hajibabaei, Mehrdad

Journal:

Year:

2017

Language:

english

File:

PDF, 2.41 MB

english, 2017

43

Validating metabarcoding-based biodiversity assessments with multi-species occupancy models: A case study using coastal marine eDNA

McClenaghan, Beverly, Compson, Zacchaeus G., Hajibabaei, Mehrdad, Doi, Hideyuki

Journal:

Year:

2020

Language:

english

File:

PDF, 1.66 MB

english, 2020

44

Putting COI Metabarcoding in Context: The Utility of Exact Sequence Variants (ESVs) in Biodiversity Analysis

Porter, Teresita M., Hajibabaei, Mehrdad

Journal:

Frontiers in Ecology and Evolution

Year:

2020

File:

PDF, 1.11 MB

2020

45

DNA damage in preserved specimens and tissue samples: a molecular assessment

Juergen Zimmermann, Mehrdad Hajibabaei, David C Blackburn, James Hanken, Elizabeth Cantin, Janos Posfai, Thomas C Evans

Journal:

Frontiers in Zoology

Year:

2008

Language:

english

File:

PDF, 3.34 MB

english, 2008

46

The DNA Barcode Linker

MIHAI ALBU, HAMID NIKBAKHT, MEHRDAD HAJIBABAEI, DONAL A. HICKEY

Journal:

Molecular Ecology Resources

Year:

2011

Language:

english

File:

PDF, 100 KB

english, 2011

47

Next-generation DNA barcoding: using next-generation sequencing to enhance and accelerate DNA barcode capture from single specimens

Shokralla, Shadi, Gibson, Joel F., Nikbakht, Hamid, Janzen, Daniel H., Hallwachs, Winnie, Hajibabaei, Mehrdad

Journal:

Molecular Ecology Resources

Year:

2014

Language:

english

File:

PDF, 484 KB

english, 2014

48

Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity

Bista, Iliana, Carvalho, Gary R., Walsh, Kerry, Seymour, Mathew, Hajibabaei, Mehrdad, Lallias, Delphine, Christmas, Martin, Creer, Simon

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 681 KB

english, 2017

49

Environmental DNA filtration techniques affect recovered biodiversity

Majaneva, Markus, Diserud, Ola H., Eagle, Shannon H. C., Boström, Erik, Hajibabaei, Mehrdad, Ekrem, Torbjørn

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 1.64 MB

english, 2018

50

Improving antiproliferative effect of the nevirapine on Hela cells by loading onto chitosan coated magnetic nanoparticles as a fully biocompatible nano drug carrier

Moghadam, Neda Hosseinpour, Salehzadeh, Sadegh, Rakhtshah, Jamshid, Tanzadehpanah, Hamid, Moghadam, Ashkan Hosseinpour, Hajibabaei, Farshid, Sharifinia, Samira, Asl, Sara Soleimani, Saidijam, Massoud

Journal:

International Journal of Biological Macromolecules

Year:

2018

Language:

english

File:

PDF, 1.84 MB

english, 2018

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