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1

Epigenetics of Sepsis

Binnie, Alexandra, Tsang, Jennifer L. Y., Hu, Pingzhao, Carrasqueiro, Gabriela, Castelo-Branco, Pedro, dos Santos, Claudia C.

Journal:

Critical Care Medicine

Year:

2020

File:

PDF, 2.03 MB

2020

2

DTF: Deep Tensor Factorization for Predicting Anticancer Drug Synergy

Sun, Zexuan, Huang, Shujun, Jiang, Peiran, Hu, Pingzhao, Lu, Zhiyong

Journal:

Year:

2020

File:

PDF, 462 KB

2020

3

A machine learning-based clinical tool for diagnosing myopathy using multi-cohort microarray expression profiles

Tran, Andrew, Walsh, Chris J., Batt, Jane, dos Santos, Claudia C., Hu, Pingzhao

Journal:

Journal of Translational Medicine

Year:

2020

File:

PDF, 1.14 MB

2020

4

A flexible approximate likelihood ratio test for detecting differential expression in microarray data

Ahmed Hossain, Joseph Beyene, Andrew R. Willan, Pingzhao Hu

Journal:

Computational Statistics & Data Analysis

Year:

2009

Language:

english

File:

PDF, 927 KB

english, 2009

5

Pathway-based joint effects analysis of rare genetic variants using Genetic Analysis Workshop 17 exon sequence data

Pingzhao Hu, Wei Xu, Lu Cheng, Xiang Xing, Andrew D Paterson

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 171 KB

english, 2011

6

A pathway-based association analysis model using common and rare variants

Lu Cheng, Pingzhao Hu, Jenna Sykes, Melania Pintilie, Geoffrey Liu, Wei Xu

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 204 KB

english, 2011

7

An empirical test of the competing destinations model

Pingzhao Hu, Jim Pooler

Journal:

Journal of Geographical Systems

Year:

2002

Language:

english

File:

PDF, 341 KB

english, 2002

8

Statistical Methods for Meta-Analysis of Microarray Data: A Comparative Study

Pingzhao Hu, Celia M. T. Greenwood, Joseph Beyene

Journal:

Information Systems Frontiers

Year:

2006

Language:

english

File:

PDF, 381 KB

english, 2006

9

Gene expression using microarrays in transplant recipients at risk of EBV lymphoproliferation after organ transplantation: Preliminary proof-of-concept

Upton Allen, Michelle Barton, Joseph Beyene, Pingzhao Hu, Nasser Khodai-Booran, Diane Hébert, Anne Dipchand, Vicky Ng, Melinda Solomon, David Grant, Annie Fecteau, Bo Ngan, Stanley Read, Maria Zielens

Journal:

Pediatric Transplantation

Year:

2009

Language:

english

File:

PDF, 1.89 MB

english, 2009

10

A genotype resource for postmortem brain samples from the Autism Tissue Program

Richard F. Wintle, Anath C. Lionel, Pingzhao Hu, Stephen D. Ginsberg, Dalila Pinto, Bhooma Thiruvahindrapduram, John Wei, Christian R. Marshall, Jane Pickett, Edwin H. Cook, Stephen W. Scherer

Journal:

Autism Research

Year:

2011

Language:

english

File:

PDF, 292 KB

english, 2011

11

Erratum: A genotype resource for postmortem brain samples from the Autism Tissue Program

Richard F. Wintle, Anath C. Lionel, Pingzhao Hu, Stephen D. Ginsberg, Dalila Pinto, Bhooma Thiruvahindrapduram, John Wei, Christian R. Marshall, Jane Pickett, Edwin H. Cook, Stephen W. Scherer

Journal:

Autism Research

Year:

2011

Language:

english

File:

PDF, 38 KB

english, 2011

12

Gene and miRNA expression profiles in autism spectrum disorders

Mohammad M. Ghahramani Seno, Pingzhao Hu, Fuad G. Gwadry, Dalila Pinto, Christian R. Marshall, Guillermo Casallo, Stephen W. Scherer

Journal:

Year:

2011

Language:

english

File:

PDF, 633 KB

english, 2011

13

Predicting protein functions by relaxation labelling protein interaction network

Pingzhao Hu, Hui Jiang, Andrew Emili

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 504 KB

english, 2010

14

Gene network modular-based classification of microarray samples

Hu, Pingzhao, Bull, Shelley B, Jiang, Hui

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 273 KB

english, 2012

15

Integrative analysis of multiple gene expression profiles with quality-adjusted effect size models

Pingzhao Hu, Celia MT Greenwood, Joseph Beyene

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 321 KB

english, 2005

16

Transcriptomic analysis of dystrophin RNAi knockdown reveals a central role for dystrophin in muscle differentiation and contractile apparatus organization

Mohammad M Ghahramani Seno, Capucine Trollet, Takis Athanasopoulos, Ian R Graham, Pingzhao Hu, George Dickson

Journal:

Year:

2010

Language:

english

File:

PDF, 454 KB

english, 2010

17

Tests for differential gene expression using weights in oligonucleotide microarray experiments

Pingzhao Hu, Joseph Beyene, Celia MT Greenwood

Journal:

Year:

2006

Language:

english

File:

PDF, 379 KB

english, 2006

18

Using the ratio of means as the effect size measure in combining results of microarray experiments

Pingzhao Hu, Celia MT Greenwood, Joseph Beyene

Journal:

BMC Systems Biology

Year:

2009

Language:

english

File:

PDF, 931 KB

english, 2009

19

Global Survey of Organ and Organelle Protein Expression in Mouse: Combined Proteomic and Transcriptomic Profiling

Thomas Kislinger, Brian Cox, Anitha Kannan, Clement Chung, Pingzhao Hu, Alexandr Ignatchenko, Michelle S. Scott, Anthony O. Gramolini, Quaid Morris, Michael T. Hallett, Janet Rossant, Timothy R. Hughe

Journal:

Year:

2006

Language:

english

File:

PDF, 1002 KB

english, 2006

20

Network analysis of transcriptional responses induced by mesenchymal stem cell treatment of experimental sepsis

Dos Santos, Claudia, Murthy, Srinivas, Hu, Pingzhao, Shan, Yuexin, Haitsma, Jack, Mei, Shirley, Stewart, Duncan, Liles, Conrad

Journal:

Journal of Critical Care

Year:

2013

Language:

english

File:

PDF, 48 KB

english, 2013

21

Computational prediction of cancer-gene function

Hu, Pingzhao, Bader, Gary, Wigle, Dennis A., Emili, Andrew

Journal:

Nature Reviews Cancer

Year:

2007

Language:

english

File:

PDF, 933 KB

english, 2007

22

Network Analysis of Transcriptional Responses Induced by Mesenchymal Stem Cell Treatment of Experimental Sepsis

dos Santos, Claudia C., Murthy, Srinivas, Hu, Pingzhao, Shan, Yuexin, Haitsma, Jack J., Mei, Shirley H.J., Stewart, Duncan J., Liles, W. Conrad

Journal:

The American Journal of Pathology

Year:

2012

Language:

english

File:

PDF, 2.93 MB

english, 2012

23

Microarray meta-analysis identifies acute lung injury biomarkers in donor lungs that predict development of primary graft failure in recipients

Hu, Pingzhao, Wang, Xinchen, Haitsma, Jack, Furmli, Suleiman, Masoom, Hussain, Liu, Mingyao, Slutsky, Arthur, Beyene, Joseph, Greenwood, Celia, Dos Santos, Claudia

Journal:

Journal of Critical Care

Year:

2013

Language:

english

File:

PDF, 48 KB

english, 2013

24

Informed target discovery for gene and stem cell therapy in acute lung injury

Zhou, Dun Yuan, Shan, Yuexin, Amatullah, Hajera, Hu, Pingzhao, Dos Santos, Claudia

Journal:

Journal of Critical Care

Year:

2013

Language:

english

File:

PDF, 50 KB

english, 2013

25

1107 Gene Expression Profiles Associated with Lack of Response to Intravenous Corticosteroids in Children with Severe Ulcerative Colitis

Boyko Kabakchiev, Dan Turner, Jeffrey S. Hyams, David R. Mack, Neal S. LeLeiko, Wallace Crandall, James Markowitz, Anthony R. Otley, Wei Xu, Pingzhao Hu, Anne M. Griffiths, Mark S. Silverberg

Journal:

Gastroenterology

Year:

2009

Language:

english

File:

PDF, 89 KB

english, 2009

26

Obesity and prostate cancer: gene expression signature of human periprostatic adipose tissue

Ricardo Ribeiro, Cátia Monteiro, Victoria Catalán, Pingzhao Hu, Virgínia Cunha, Amaia Rodríguez, Javier Gómez-Ambrosi, Avelino Fraga, Paulo Príncipe, Carlos Lobato, Francisco Lobo, António Morais, Vit

Journal:

Year:

2012

Language:

english

File:

PDF, 864 KB

english, 2012

27

Neuregulin 1-alpha regulates phosphorylation, acetylation, and alternative splicing in lymphoblastoid cells 1

Ghahramani Seno, Mohammad M., Gwadry, Fuad G., Hu, Pingzhao, Scherer, Stephen W., Naumova, Anna K.

Journal:

Year:

2013

Language:

english

File:

PDF, 493 KB

english, 2013

28

RNA-Seq analysis of the parietal cortex in Alzheimer's disease reveals alternatively spliced isoforms related to lipid metabolism

Mills, James D., Nalpathamkalam, Thomas, Jacobs, Heidi I.L., Janitz, Caroline, Merico, Daniele, Hu, Pingzhao, Janitz, Michael

Journal:

Neuroscience Letters

Year:

2013

Language:

english

File:

PDF, 743 KB

english, 2013

29

Brain-expressed exons under purifying selection are enriched for de novo mutations in autism spectrum disorder

Uddin, Mohammed, Tammimies, Kristiina, Pellecchia, Giovanna, Alipanahi, Babak, Hu, Pingzhao, Wang, Zhuozhi, Pinto, Dalila, Lau, Lynette, Nalpathamkalam, Thomas, Marshall, Christian R, Blencowe, Benjam

Journal:

Nature Genetics

Year:

2014

Language:

english

File:

PDF, 962 KB

english, 2014

30

Metaphyseal Dysplasia with Maxillary Hypoplasia and Brachydactyly Is Caused by a Duplication in RUNX2

Moffatt, Pierre, Ben Amor, Mouna, Glorieux, Francis H., Roschger, Paul, Klaushofer, Klaus, Schwartzentruber, Jeremy A., Paterson, Andrew D., Hu, Pingzhao, Marshall, Christian, Fahiminiya, Somayyeh, Ma

Journal:

The American Journal of Human Genetics

Year:

2013

Language:

english

File:

PDF, 761 KB

english, 2013

31

Discriminative learning of generative models: large margin multinomial mixture models for document classification

Jiang, Hui, Pan, Zhenyu, Hu, Pingzhao

Journal:

Pattern Analysis and Applications

Year:

2015

Language:

english

File:

PDF, 1.02 MB

english, 2015

32

Dynamic pathway analysis of genes associated with blood pressure using whole genome sequence data

Pingzhao Hu,Andrew D Paterson

Journal:

BMC Proceedings

Year:

2014

Language:

english

File:

PDF, 446 KB

english, 2014

33

[IEEE 2006 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology - Toronto, ON, Canada (2006.09.28-2006.09.29)] 2006 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology - Integrating Affymetrix microarray data sets using probe-level test statistic for predicting prostate cancer

Hu, Pingzhao, Greenwood, Celia MT, Beyene, Joseph

Year:

2006

Language:

english

File:

PDF, 220 KB

english, 2006

34

[IEEE 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshop, BIBMW - Washington, DC, USA (2009.11.1-2009.11.4)] 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshop - A topology-sharing based method for protein function prediction via analysis of protein functional association networks

Hu, Pingzhao, Jiang, Hui, Emili, Andrew

Year:

2009

Language:

english

File:

PDF, 127 KB

english, 2009

35

Identification of genomic signatures in circulating tumor cells from breast cancer

Kanwar, Nisha, Hu, Pingzhao, Bedard, Philippe, Clemons, Mark, McCready, David, Done, Susan J.

Journal:

International Journal of Cancer

Year:

2015

Language:

english

File:

PDF, 2.73 MB

english, 2015

36

A high-resolution copy-number variation resource for clinical and population genetics

Uddin, Mohammed, Thiruvahindrapuram, Bhooma, Walker, Susan, Wang, Zhuozhi, Hu, Pingzhao, Lamoureux, Sylvia, Wei, John, MacDonald, Jeffrey R., Pellecchia, Giovanna, Lu, Chao, Lionel, Anath C., Gazzello

Journal:

Genetics in Medicine

Year:

2014

Language:

english

File:

PDF, 5.02 MB

english, 2014

37

Association Between a Multi-Locus Genetic Risk Score and Inflammatory Bowel Disease

Hu, Pingzhao, Muise, Aleixo, Xing, Xiang, Brume, John, Silverberg, Mark, Xu, Wei, Hu, Pingzhao, Muise, Aleixo, Xing, Xiang, Brume, John, Silverberg, Mark, Xu, Wei

Journal:

Bioinformatics and Biology Insights

Year:

2013

Language:

english

File:

PDF, 681 KB

english, 2013

38

Data Integration in Genetics and Genomics: Methods and Challenges

Hamid, Jemila S., Hu, Pingzhao, Roslin, Nicole M., Ling, Vicki, Greenwood, Celia M. T., Beyene, Joseph

Journal:

Human Genomics and Proteomics

Year:

2009

Language:

english

File:

PDF, 299 KB

english, 2009

39

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

Hu, Pingzhao, Janga, Sarath Chandra, Babu, Mohan, Díaz-Mejía, J. Javier, Butland, Gareth, Yang, Wenhong, Pogoutse, Oxana, Guo, Xinghua, Phanse, Sadhna, Wong, Peter, Chandran, Shamanta, Christopoulos,

Journal:

Year:

2009

Language:

english

File:

PDF, 3.12 MB

english, 2009

40

Prenatal Exposure to Maternal Cigarette Smoking and DNA Methylation: Epigenome-Wide Association in a Discovery Sample of Adolescents and Replication in an Independent Cohort at Birth through 17 Years of Age

Lee, Ken W. K., Richmond, Rebecca, Hu, Pingzhao, French, Leon, Shin, Jean, Bourdon, Celine, Reischl, Eva, Waldenberger, Melanie, Zeilinger, Sonja, Gaunt, Tom, McArdle, Wendy, Ring, Sue, Woodward, Geof

Journal:

Environmental Health Perspectives

Year:

2014

Language:

english

File:

PDF, 288 KB

english, 2014

41

Pathway-based analysis of a genome-wide case-control association study of rheumatoid arthritis

Beyene, Joseph, Hu, Pingzhao, Hamid, Jemila S, Parkhomenko, Elena, Paterson, Andrew D, Tritchler, David

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 217 KB

english, 2009

42

Using a higher criticism statistic to detect modest effects in a genome-wide study of rheumatoid arthritis

Parkhomenko, Elena, Tritchler, David, Lemire, Mathieu, Hu, Pingzhao, Beyene, Joseph

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 227 KB

english, 2009

43

Highly Pathogenic H5N1 and Novel H7N9 Influenza A Viruses Induce More Profound Proteomic Host Responses than Seasonal and Pandemic H1N1 Strains

Simon, Philippe François, McCorrister, Stuart, Hu, Pingzhao, Chong, Patrick, Silaghi, Alex, Westmacott, Garrett, Coombs, Kevin M., Kobasa, Darwyn

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 49.31 MB

english, 2015

44

164 Dietary Lactose Consumption Is Associated With Both Increased Symptoms and Intestinal Inflammation in IBD

Vagianos, Kathy, Sexton, Kathryn, Bernstein, Matthew, Hu, Pingzhao, Zhao, Kaiqiong, Bernstein, Charles N., Targownik, Laura

Journal:

Gastroenterology

Year:

2016

Language:

english

File:

PDF, 1.17 MB

english, 2016

45

[IEEE 2003 International Joint Conference on Neural Networks - Portland, OR, USA (20-24 July 2003)] Proceedings of the International Joint Conference on Neural Networks, 2003. - Predicting intrusions with local linear models

PingZhao Hu,, Heywood, M.I.

Year:

2003

Language:

english

File:

PDF, 428 KB

english, 2003

46

Salutary effect of resveratrol on sepsis-induced myocardial depression*

Smeding, Lonneke, Leong-Poi, Howard, Hu, Pingzhao, Shan, Yuexin, Haitsma, Jack J., Horvath, Eva, Furmli, Suleiman, Masoom, Hussain, Kuiper, Jan Willem, Slutsky, Arthur S., Parker, Thomas G., Plötz, Fr

Journal:

Critical Care Medicine

Year:

2012

Language:

english

File:

PDF, 1.59 MB

english, 2012

47

Differential gene profiling in acute lung injury identifies injury-specific gene expression*

dos Santos, Claudia C., Okutani, Daisuke, Hu, Pingzhao, Han, Bing, Crimi, Ettore, He, Xiaolin, Keshavjee, Shaf, Greenwood, Celia, Slutsky, Author S., Zhang, Haibo, Liu, Mingyao

Journal:

Critical Care Medicine

Year:

2008

Language:

english

File:

PDF, 1.25 MB

english, 2008

48

The genetic diversity of Epstein-Barr virus in the setting of transplantation relative to non-transplant settings: A feasibility study

Allen, Upton D., Hu, Pingzhao, Pereira, Sergio L., Robinson, Joan L., Paton, Tara A., Beyene, Joseph, Khodai-Booran, Nasser, Dipchand, Anne, Hébert, Diane, Ng, Vicky, Nalpathamkalam, Thomas, Read, Sta

Journal:

Pediatric Transplantation

Year:

2016

Language:

english

File:

PDF, 101 KB

english, 2016

49

Transcriptomic analysis reveals abnormal muscle repair and remodeling in survivors of critical illness with sustained weakness

Walsh, Christopher J., Batt, Jane, Herridge, Margaret S., Mathur, Sunita, Bader, Gary D., Hu, Pingzhao, dos Santos, Claudia C.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.06 MB

english, 2016

50

Identity-by-descent mapping for diastolic blood pressure in unrelated Mexican Americans

Xiao-Qing Liu,Jillian Fazio,Pingzhao Hu,Andrew D. Paterson

Journal:

BMC Proceedings

Year:

2016

Language:

english

File:

PDF, 420 KB

english, 2016