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51

Identification of Lynch syndrome mutations in the MLH1–PMS2 interface that disturb dimerization and mismatch repair

Jan Kosinski, Inga Hinrichsen, Janusz M. Bujnicki, Peter Friedhoff, Guido Plotz

Journal:

Year:

2010

Language:

english

File:

PDF, 423 KB

english, 2010

52

Sequence–structure–function analysis of the bifunctional enzyme MnmC that catalyses the last two steps in the biosynthesis of hypermodified nucleoside mnm5s2U in tRNA

Martine Roovers, Yamina Oudjama, Katarzyna H. Kaminska, Elzbieta Purta, Joël Caillet, Louis Droogmans, Janusz M. Bujnicki

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 1.02 MB

english, 2008

53

Co-evolution-driven switch of J-protein specificity towards an Hsp70 partner

Pukszta, Sebastian, Schilke, Brenda, Dutkiewicz, Rafal, Kominek, Jacek, Moczulska, Kaja, Stepien, Barbara, Reitenga, Krista G, Bujnicki, Janusz M, Williams, Barry, Craig, Elizabeth A

Journal:

Year:

2010

Language:

english

File:

PDF, 796 KB

english, 2010

54

IAPs contain an evolutionarily conserved ubiquitin-binding domain that regulates NF-κB as well as cell survival and oncogenesis

Gyrd-Hansen, Mads, Darding, Maurice, Miasari, Maria, Santoro, Massimo M., Zender, Lars, Xue, Wen, Tenev, Tencho, da Fonseca, Paula C.A., Zvelebil, Marketa, Bujnicki, Janusz M.

Journal:

Nature Cell Biology

Year:

2008

Language:

english

File:

PDF, 6.45 MB

english, 2008

55

Identification of a Single HNH Active Site in Type IIS Restriction Endonuclease Eco31I

Arturas Jakubauskas, Jolanta Giedriene, Janusz M. Bujnicki, Arvydas Janulaitis

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.50 MB

english, 2007

56

Statins Impair Glucose Uptake in Tumor Cells

Malenda, Agata, Skrobanska, Anna, Issat, Tadeusz, Winiarska, Magdalena, Bil, Jacek, Oleszczak, Bozenna, Sinski, Maciej, Firczuk, Małgorzata, Bujnicki, Janusz M., Chlebowska, Justyna, Staruch, Adam D.,

Journal:

Year:

2012

Language:

english

File:

PDF, 1.25 MB

english, 2012

57

GDFuzz3D: a method for protein 3D structure reconstruction from contact maps, based on a non-Euclidean distance function

Pietal, Michal J., Bujnicki, Janusz M., Kozlowski, Lukasz P.

Journal:

Year:

2015

Language:

english

File:

PDF, 1017 KB

english, 2015

58

Coarse-grained modeling of RNA 3D structure

Dawson, Wayne K., Maciejczyk, Maciej, Jankowska, Elzbieta J., Bujnicki, Janusz M.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.98 MB

english, 2016

59

Petri net–based model of the human DNA base excision repair pathway

Radom, Marcin, Machnicka, Magdalena A., Krwawicz, Joanna, Bujnicki, Janusz M., Formanowicz, Piotr, Chaouiya, Claudine

Journal:

Year:

2019

File:

PDF, 1.60 MB

2019

60

Atomic model of the 5-methylcytosine-specific restriction enzyme McrA reveals an atypical zinc finger and structural similarity to ββαMe endonucleases

Janusz M. Bujnicki, Monika Radlinska, Leszek Rychlewski

Journal:

Molecular Microbiology

Year:

2000

Language:

english

File:

PDF, 124 KB

english, 2000

61

A homology model of restriction endonuclease SfiI in complex with DNA

Agnieszka A Chmiel, Janusz M Bujnicki, Krzysztof J Skowronek

Journal:

BMC Structural Biology

Year:

2005

Language:

english

File:

PDF, 3.51 MB

english, 2005

62

Structure Prediction and Phylogenetic Analysis of a Functionally Diverse Family of Proteins Homologous to the MT-A70 Subunit of the Human mRNA:m6A Methyltransferase

Janusz M. Bujnicki, Marcin Feder, Monika Radlinska, Robert M. Blumenthal

Journal:

Journal of Molecular Evolution

Year:

2002

Language:

english

File:

PDF, 1.11 MB

english, 2002

63

Structural and Functional Characterization of Mitochondrial EndoG, a Sugar Non-specific Nuclease which Plays an Important Role During Apoptosis

Patrick Schäfer, Sebastian R. Scholz, Oleg Gimadutdinow, Iwona A. Cymerman, Janusz M. Bujnicki, Adolf Ruiz-Carrillo, Alfred Pingoud, Gregor Meiss

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 860 KB

english, 2004

64

Prediction of Protein Structures, Functions, and Interactions (Bujnicki/Prediction of Protein Structures, Functions, and Interactions) || Prediction of Molecular Interactions from 3D-Structures: From Small Ligands to Large Protein Complexes

Bujnicki, Janusz M.

Year:

2008

Language:

english

File:

PDF, 477 KB

english, 2008

65

A novel homozygous p.Arg527Leu LMNA mutation in two unrelated Egyptian families causes overlapping mandibuloacral dysplasia and progeria syndrome

Al-Haggar, Mohammad, Madej-Pilarczyk, Agnieszka, Kozlowski, Lukasz, Bujnicki, Janusz M, Yahia, Sohier, Abdel-Hadi, Dina, Shams, Amany, Ahmad, Nermin, Hamed, Sahar, Puzianowska-Kuznicka, Monika

Journal:

European Journal of Human Genetics

Year:

2012

Language:

english

File:

PDF, 1.31 MB

english, 2012

66

Experimental Evidence for a ββα-Me-Finger Nuclease Motif To Represent the Active Site of the Caspase-Activated DNase †

Scholz, Sebastian R., Korn, Christian, Bujnicki, Janusz M., Gimadutdinow, Oleg, Pingoud, Alfred, Meiss, Gregor

Journal:

Year:

2003

Language:

english

File:

PDF, 282 KB

english, 2003

67

Identification and modeling of a phosphatase-like domain in a tRNA 2′- O -ribosyl phosphate transferase Rit1p

Czerwoniec, Anna, Bujnicki, Janusz M.

Journal:

Year:

2011

Language:

english

File:

PDF, 1.92 MB

english, 2011

68

An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies

Chawla, Mohit, Oliva, Romina, Bujnicki, Janusz M., Cavallo, Luigi

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 26 KB

english, 2015

69

Structure and mechanism of reverse transcriptases

Nowak, Elzbieta, Miller, Jeniffer T., Bona, Marion K., Studnicka, Justyna, Konarev, Petr V., Szczepanowski, Roman H., Potrzebowski, Wojciech, Svergun, Dmitri I., Jurkowski, Jakub, Bujnicki, Janusz, Gr

Journal:

Acta Crystallographica Section A Foundations and Advances

Year:

2015

File:

PDF, 54 KB

2015

70

Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition

Kumari, Pooja, Aeschimann, Florian, Gaidatzis, Dimos, Keusch, Jeremy J., Ghosh, Pritha, Neagu, Anca, Pachulska-Wieczorek, Katarzyna, Bujnicki, Janusz M., Gut, Heinz, Großhans, Helge, Ciosk, Rafal

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 2.42 MB

english, 2018

71

Analytics of Protein-DNA Interactions. By Harald Seitz (ed.)

Janusz M. Bujnicki

Journal:

Biotechnology Journal

Year:

2007

Language:

english

File:

PDF, 70 KB

english, 2007

72

Characterization of prmt7α and β isozymes from Chinese hamster cells sensitive and resistant to topoisomerase II inhibitors

Laurent Gros, Axelle Renodon-Cornière, Bruno Robert de Saint Vincent, Marcin Feder, Janusz M. Bujnicki, Alain Jacquemin-Sablon

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Year:

2006

Language:

english

File:

PDF, 1.25 MB

english, 2006

73

Common Design Principles in the Spliceosomal RNA Helicase Brr2 and in the Hel308 DNA Helicase

Vladimir Pena, Sina Mozaffari Jovin, Patrizia Fabrizio, Jerzy Orlowski, Janusz M. Bujnicki, Reinhard Lührmann, Markus C. Wahl

Journal:

Year:

2011

Language:

english

File:

PDF, 40 KB

english, 2011

74

Unusual evolutionary history of the tRNA splicing endonuclease EndA: Relationship to the LAGLIDADG and PD-(D/E)XK deoxyribonucleases

Janusz M. Bujnicki, Leszek Rychlewski

Journal:

Protein Science

Year:

2001

Language:

english

File:

PDF, 341 KB

english, 2001

75

Reassignment of specificities of two cap methyltransferase domains in the reovirus lambda2 protein

Janusz M Bujnicki, Leszek Rychlewski

Journal:

Year:

2001

Language:

english

File:

PDF, 1.86 MB

english, 2001

76

Corrigendum to âHsdR Subunit of the Type I Restriction-Modification Enzyme EcoR124I: Biophysical Characterisation and Structural Modellingâ [J. Mol. Biol. 376(2) 2008 Feb 15: 438â452.]

Obarska-Kosinska, Agnieszka, Taylor, James E., Callow, Philip, Orlowski, Jerzy, Bujnicki, Janusz M.

Journal:

Journal of Molecular Biology

Year:

2020

File:

PDF, 175 KB

2020

77

Fold recognition, homology modeling, docking simulations, kinetics analysis and mutagenesis of ATP/CTP:tRNA nucleotidyltransferase from Methanococcus jannaschii

Janusz M. Bujnicki, Megan A. Albert, Donald J. Nelson, David L. Thurlow

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 1017 KB

english, 2003

78

RNA and protein 3D structure modeling: similarities and differences

Kristian Rother, Magdalena Rother, Michał Boniecki, Tomasz Puton, Janusz M. Bujnicki

Journal:

Journal of Molecular Modeling

Year:

2011

Language:

english

File:

PDF, 487 KB

english, 2011

79

Solution conformation of adenovirus virus associated RNA-I and its interaction with PKR

Dzananovic, Edis, Patel, Trushar R., Chojnowski, Grzegorz, Boniecki, Michal J., Deo, Soumya, McEleney, Kevin, Harding, Stephen E., Bujnicki, Janusz M., McKenna, Sean A.

Journal:

Journal of Structural Biology

Year:

2014

Language:

english

File:

PDF, 1.33 MB

english, 2014

80

Designability landscape reveals sequence features that define axial helix rotation in four-helical homo-oligomeric antiparallel coiled-coil structures

Szczepaniak, Krzysztof, Lach, Grzegorz, Bujnicki, Janusz M., Dunin-Horkawicz, Stanislaw

Journal:

Journal of Structural Biology

Year:

2014

Language:

english

File:

PDF, 2.94 MB

english, 2014

81

Structural and functional insights into tRNA binding and adenosine N1-methylation by an archaeal Trm10 homologue

Van Laer, Bart, Roovers, Martine, Wauters, Lina, Kasprzak, Joanna M., Dyzma, Michal, Deyaert, Egon, Kumar Singh, Ranjan, Feller, André, Bujnicki, Janusz M., Droogmans, Louis, Versées, Wim

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.34 MB

english, 2016

82

Crystal Structure and Directed Evolution of Specificity of NlaIV Restriction Endonuclease

Czapinska, Honorata, Siwek, Wojciech, Szczepanowski, Roman H., Bujnicki, Janusz M., Bochtler, Matthias, Skowronek, Krzysztof J.

Journal:

Journal of Molecular Biology

Year:

2019

Language:

english

File:

PDF, 8.72 MB

english, 2019

83

A combined structural and biochemical approach reveals translocation and stalling of UvrB on the DNA lesion as a mechanism of damage verification in bacterial nucleotide excision repair

Jaciuk, Marcin, Swuec, Paolo, Gaur, Vineet, Kasprzak, Joanna M., Renault, Ludovic, Dobrychłop, Mateusz, Nirwal, Shivlee, Bujnicki, Janusz M., Costa, Alessandro, Nowotny, Marcin

Journal:

Year:

2020

Language:

english

File:

PDF, 2.01 MB

english, 2020

84

Virtual Screening and Experimental Verification to Identify Potential Inhibitors of the ErmC Methyltransferase Responsible for Bacterial Resistance against Macrolide Antibiotics

Marcin Feder, Elzbieta Purta, Lukasz Koscinski, Sonja Čubrilo, Gordana Maravic Vlahovicek, Janusz M. Bujnicki

Journal:

Year:

2008

Language:

english

File:

PDF, 361 KB

english, 2008

85

Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases

Karolina L Tkaczuk, Stanislaw Dunin-Horkawicz, Elzbieta Purta, Janusz M Bujnicki

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 5.14 MB

english, 2007

86

Phylogenomic analysis of the GIY-YIG nuclease superfamily

Stanislaw Dunin-Horkawicz, Marcin Feder, Janusz M Bujnicki

Journal:

Year:

2006

Language:

english

File:

PDF, 3.56 MB

english, 2006

87

Prediction of a common fold for all four subunits of the yeast tRNA splicing endonuclease: implications for the evolution of the EndA/Sen family

Janusz M Bujnicki, Leszek Rychlewski

Journal:

Year:

2000

Language:

english

File:

PDF, 139 KB

english, 2000

88

Characterization of the cofactor-binding site in the SPOUT-fold methyltransferases by computational docking ofS-adenosylmethionine to three crystal structures

Michal A Kurowski, Joanna M Sasin, Marcin Feder, Janusz Debski, Janusz M Bujnicki

Journal:

BMC Bioinformatics

Year:

2003

Language:

english

File:

PDF, 659 KB

english, 2003

89

Molecular evolution of dihydrouridine synthases

Joanna M Kasprzak, Anna Czerwoniec, Janusz M Bujnicki

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.08 MB

english, 2012

90

Evolutionary Relationship between Different Subgroups of Restriction Endonucleases

Pingoud, Vera, Kubareva, Elena, Stengel, Gudrun, Friedhoff, Peter, Bujnicki, Janusz M., Urbanke, Claus, Sudina, Anna, Pingoud, Alfred

Journal:

Journal of Biological Chemistry

Year:

2002

Language:

english

File:

PDF, 986 KB

english, 2002

91

Characterization of the termini of the West Nile virus genome and their interactions with the small isoform of the 2′ 5′-oligoadenylate synthetase family

Deo, Soumya, Patel, Trushar R., Chojnowski, Grzegorz, Koul, Amit, Dzananovic, Edis, McEleney, Kevin, Bujnicki, Janusz M., McKenna, Sean A.

Journal:

Journal of Structural Biology

Year:

2015

Language:

english

File:

PDF, 2.62 MB

english, 2015

92

NPDock: a web server for protein–nucleic acid docking

Tuszynska, Irina, Magnus, Marcin, Jonak, Katarzyna, Dawson, Wayne, Bujnicki, Janusz M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 903 KB

english, 2015

93

The architecture of the Schizosaccharomyces pombe CCR4-NOT complex

Ukleja, Marta, Cuellar, Jorge, Siwaszek, Aleksandra, Kasprzak, Joanna M., Czarnocki-Cieciura, Mariusz, Bujnicki, Janusz M., Dziembowski, Andrzej, M. Valpuesta, Jose

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.48 MB

english, 2016

94

Asymmetric DNA methylation by dimeric EcoP15I DNA methyltransferase

Urulangodi, Madhusoodanan, Dhanaraju, Rajkumar, Gupta, Kanchan, Roy, Rajendra P., Bujnicki, Janusz M., Rao, Desirazu N.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.06 MB

english, 2016

95

BRICKWORX builds recurrent RNA and DNA structural motifs into medium and low-resolution electron density maps

Chojnowski, Grzegorz, Waleń, Tomasz, Piątkowski, Paweł, Potrzebowski, Wojciech, Bujnicki, Janusz M.

Journal:

Acta Crystallographica Section A Foundations and Advances

Year:

2015

File:

PDF, 1.31 MB

2015

96

DNAmoreDB, a database of DNAzymes

Ponce-Salvatierra, Almudena, Boccaletto, Pietro, Bujnicki, Janusz M

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 1.30 MB

2020

97

TheyfhQgene ofEscherichia coliencodes a tRNA:Cm32/Um32 methyltransferase

Elzbieta Purta, Françoise van Vliet, Karolina L Tkaczuk, Stanislaw Dunin-Horkawicz, Hirotada Mori, Louis Droogmans, Janusz M Bujnicki

Journal:

BMC Molecular Biology

Year:

2006

Language:

english

File:

PDF, 1.98 MB

english, 2006

98

DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking

Irina Tuszynska, Janusz M Bujnicki

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.09 MB

english, 2011

99

Identification of amino acids important for target recognition by the DNA:m5C methyltransferase M.NgoPII by alanine-scanning mutagenesis of residues at the protein–DNA interface

Monika Radlinska, Aneta Kondrzycka-Dada, Andrzej Piekarowicz, Janusz M. Bujnicki

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 476 KB

english, 2005

100

Effect of substrate features and mutagenesis of active site tyrosine residues on the reaction course catalysed by Trypanosoma brucei sterol C-24-methyltransferase

Ganapathy, Kulothungan, Wywial, Ewa, Bujnicki, Janusz M., Nwogwugwu, Chizaram A., Nes, W. David, Liu, Jialin

Journal:

Biochemical Journal

Year:

2011

Language:

english

File:

PDF, 1.22 MB

english, 2011

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