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51

Single-Molecule DNA Biosensors for Quantitative Transcription Factor Detection

Crawford, Robert, Lymperopoulos, Konstantinos, Torella, Joseph P., Heilemann, Mike, Hwang, Ling C., Holden, Seamus J., Kapanidis, Achillefs

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 40 KB

english, 2010

52

Warning signs of stroke

Uphoff, Stephan, Holden, Seamus, Le Reste, Ludovic, van de Linde, Sebastian, Heilemann, Mike, Kapanidis, Achillefs N.

Journal:

The American Journal of Emergency Medicine

Year:

1989

Language:

english

File:

PDF, 137 KB

english, 1989

53

Measuring Multiple Distances within a Single Molecule using Switchable FRET

Uphoff, Stephan, Holden, Seamus, Le Reste, Ludovic, van de Linde, Sebastian, Heilemann, Mike, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 34 KB

english, 2010

54

TIRF-Based FRET with One Base-Pair Resolution

Holden, Seamus J., Uphoff, Stephan, Yadin, David, Hohlbein, Johannes, Le Reste, Ludovic, Britton, Oliver J., Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 40 KB

english, 2010

55

Separating Static and Dynamic Heterogeneity in Single-Molecule FRET Experiments with Burst Variance Analysis (BVA)

Torella, Joseph P., Santoso, Yusdi, Holden, Seamus J., Hohlbein, Johannes, Joyce, Catherine M., Potapova, Olga, Grindley, Nigel D.F., Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 34 KB

english, 2010

56

Characterizing Influenza a RNA Polymerase - Promoter Interaction using Ensemble Fluorescence Spectroscopy

Tomescu, Alexandra I., Robb, Nicole C., Hengrung, Narin, Fodor, Ervin, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 40 KB

english, 2013

57

Single-Molecule Fluorescence Studies of Site-Specific DNA Recombination

Pinkney, Justin, Zawadzki, Pawel, Sherratt, David J., Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 35 KB

english, 2012

58

Regime-Changing Hidden Markov Modeling and Statistical Analysis for Complex Single-Molecule Time Series

Gryte, Kristofer, Wardrope, Alistair, Evans, Geraint, Uphoff, Stephan, Le Reste, Ludovic, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 60 KB

english, 2012

59

Studying the organization of DNA repair by single-cell and single-molecule imaging

Uphoff, Stephan, Kapanidis, Achillefs N.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.22 MB

english, 2014

60

New FRET Methods for Studying Processing of Nucleic Acids by Protein Machines

Kapanidis, Achillefs

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 42 KB

english, 2014

61

Novel Conformational States in Mutator DNA Polymerases Observed Using Single-Molecule FRET

Hohlbein, Johannes, Joyce, Catherine M., Shoolizadeh, Pouya, Evans, Geraint, Potapova, Olga, Bermek, Oya, Duchillumigusin, Diego, Grindley, Nigel D.F., Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 54 KB

english, 2011

62

Super-Resolution Fluorescence Microscopy of Transcription Sites in E. coli

Endesfelder, Ulrike, Finan, Kieran, Holden, Seamus, Cook, Peter R., Kapanidis, Achillefs N., Heilemann, Mike

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 47 KB

english, 2014

63

Detection of Specific mRNA Synthesis in Rotavirus using Single Molecule Hybridization

Periz, Javier, Celma, Cristina, Pinkney, Justin, Roy, Polly, Kapanidis, Achillefs

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 41 KB

english, 2012

64

Combining Accurate FRET and Tracking of Single Protein and DNA Molecules in Live Bacteria

Plochowietz, Anne, Crawford, Robert, Aigrain, Louise, Sustarsic, Marko, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 78 KB

english, 2014

65

Super-Resolution Imaging of Transcription in Live Bacterial Cells

Stracy, Mathew, Uphoff, Stephan, Garza de Leon, Federico, Kapanidis, Achillefs

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 44 KB

english, 2014

66

Single-Molecule Fluorescence and FRET Measurements on Internalized Proteins in Living Bacteria

Aigrain, Louise, Crawford, Robert, Torella, Joseph P., Plochowietz, Anne, Sustarsic, Marko, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 37 KB

english, 2013

67

In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair

Stracy, Mathew, Uphoff, Stephan, Garza de Leon, Federico, Kapanidis, Achillefs N.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.02 MB

english, 2014

68

Optimized delivery of fluorescently labeled proteins in live bacteria using electroporation

Sustarsic, Marko, Plochowietz, Anne, Aigrain, Louise, Yuzenkova, Yulia, Zenkin, Nikolay, Kapanidis, Achillefs

Journal:

Histochemistry and Cell Biology

Year:

2014

Language:

english

File:

PDF, 1.82 MB

english, 2014

69

Novel Method for the Production of Color-Compatible Ferrous Sulfate-Fortified Simulated Rice through Extrusion

Kapanidis, Achillefs N., Lee, Tung-Ching

Journal:

Journal of Agricultural and Food Chemistry

Year:

1996

Language:

english

File:

PDF, 109 KB

english, 1996

70

Sensing DNA Opening in Transcription Using Quenchable Förster Resonance Energy Transfer

Cordes, Thorben, Santoso, Yusdi, Tomescu, Alexandra I., Gryte, Kristofer, Hwang, Ling Chin, Camará, Beatriz, Wigneshweraraj, Sivaramesh, Kapanidis, Achillefs N.

Journal:

Year:

2010

Language:

english

File:

PDF, 3.78 MB

english, 2010

71

Alternating-Laser Excitation of Single Molecules

Kapanidis, Achillefs N., Laurence, Ted A., Lee, Nam Ki, Margeat, Emmanuel, Kong, Xiangxu, Weiss, Shimon

Journal:

Accounts of Chemical Research

Year:

2005

File:

PDF, 19 KB

2005

72

Tethered Fluorophore Motion: Studying Large DNA Conformational Changes by Single-fluorophore Imaging

May, Peter F.J., Pinkney, Justin N.M., Zawadzki, Pawel, Evans, Geraint W., Sherratt, David J., Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 1.95 MB

english, 2014

73

Site-Specific Incorporation of Fluorescent Probes into Protein: Hexahistidine-Tag-Mediated Fluorescent Labeling with (Ni 2+ :Nitrilotriacetic Acid) n −Fluorochrome Conjugates

Kapanidis, Achillefs N., Ebright, Yon W., Ebright, Richard H.

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 66 KB

english, 2001

74

Photon Arrival-Time Interval Distribution (PAID): A Novel Tool for Analyzing Molecular Interactions

Laurence, Ted A., Kapanidis, Achillefs N., Kong, Xiangxu, Chemla, Daniel S., Weiss, Shimon

Journal:

Journal of Physical Chemistry B

Year:

2004

Language:

english

File:

PDF, 872 KB

english, 2004

75

Probing Biomolecular Structures and Dynamics of Single Molecules Using In-gel Alternating-Laser Excitation

Santoso, Yusdi, Kapanidis, Achillefs N.

Journal:

Analytical Chemistry

Year:

2009

Language:

english

File:

PDF, 2.30 MB

english, 2009

76

Single-Molecule FRET for Dynamic Structural Biology: DNA Polymerase i Structure and Mechanism with Angstrom Precision

Sustarsic, Marko, Craggs, Timothy, Hohlbein, Johannes, Cuthbert, Andrew, Taylor, Nicholas, Kaju, Hendrik, Mosayebi, Majid, Doye, Jonathan, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 39 KB

english, 2015

77

Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid

Stracy, Mathew, Lesterlin, Christian, Garza de Leon, Federico, Uphoff, Stephan, Zawadzki, Pawel, Kapanidis, Achillefs N.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 2.26 MB

english, 2015

78

Single in the (Cell) City: a protein-folding story

Plochowietz, Anne, Kapanidis, Achillefs N

Journal:

Year:

2015

File:

PDF, 1.72 MB

2015

79

Corrigendum to “In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair” [FEBS Lett. 588 (19) (2014) 3585–3594]

Stracy, Mathew, Uphoff, Stephan, Garza de Leon, Federico, Kapanidis, Achillefs N.

Journal:

Year:

2015

Language:

english

File:

PDF, 215 KB

english, 2015

80

Taking the ruler to the jungle: single-molecule FRET for understanding biomolecular structure and dynamics in live cells

Sustarsic, Marko, Kapanidis, Achillefs N

Journal:

Current Opinion in Structural Biology

Year:

2015

Language:

english

File:

PDF, 878 KB

english, 2015

81

Assembly, translocation, and activation of XerCD- dif recombination by FtsK translocase analyzed in real-time by FRET and two-color tethered fluorophore motion

May, Peter F. J., Zawadzki, Pawel, Sherratt, David J., Kapanidis, Achillefs N., Arciszewska, Lidia K.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 2.05 MB

english, 2015

82

Non-covalent Single Transcription Factor Encapsulation Inside a DNA Cage

Crawford, Robert, Erben, Christoph M., Periz, Javier, Hall, Lucy M., Brown, Tom, Turberfield, Andrew J., Kapanidis, Achillefs N.

Journal:

Angewandte Chemie International Edition

Year:

2013

Language:

english

File:

PDF, 906 KB

english, 2013

83

Real-time single-molecule studies of the motions of DNA polymerase fingers illuminate DNA synthesis mechanisms

Evans, Geraint W., Hohlbein, Johannes, Craggs, Timothy, Aigrain, Louise, Kapanidis, Achillefs N.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 4.52 MB

english, 2015

84

Conformational landscapes of DNA polymerase I and mutator derivatives establish fidelity checkpoints for nucleotide insertion

Hohlbein, Johannes, Aigrain, Louise, Craggs, Timothy D., Bermek, Oya, Potapova, Olga, Shoolizadeh, Pouya, Grindley, Nigel D. F., Joyce, Catherine M., Kapanidis, Achillefs N.

Journal:

Nature Communications

Year:

2013

Language:

english

File:

PDF, 1.63 MB

english, 2013

85

Alternating Laser Excitation for Solution-Based Single-Molecule FRET

Kapanidis, Achillefs, Majumdar, Devdoot, Heilemann, Mike, Nir, Eyal, Weiss, Shimon

Journal:

Cold Spring Harbor Protocols

Year:

2015

Language:

english

File:

PDF, 569 KB

english, 2015

86

Aligning the μs-ALEX Setup

Kapanidis, Achillefs, Majumdar, Devdoot, Heilemann, Mike, Nir, Eyal, Weiss, Shimon

Journal:

Cold Spring Harbor Protocols

Year:

2015

Language:

english

File:

PDF, 143 KB

english, 2015

87

Assembling the μs-ALEX Setup

Kapanidis, Achillefs, Majumdar, Devdoot, Heilemann, Mike, Nir, Eyal, Weiss, Shimon

Journal:

Cold Spring Harbor Protocols

Year:

2015

Language:

english

File:

PDF, 230 KB

english, 2015

88

Stable End-Sealed DNA as Robust Nano-rulers for In Vivo Single-Molecule Fluorescence

Plochowietz, Anne, El-Sagheer, Afaf Helmy, Brown, Tom, Kapanidis, Achillefs N

Journal:

Chemical Science

Year:

2016

Language:

english

File:

PDF, 1.25 MB

english, 2016

89

Studies of the FtsK DNA Translocase using Two-Color Tethered Fluorophore Motion

May, Peter F.J., Zawadzki, Pawel, Arciszewska, Lidia K., Sherratt, David, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 43 KB

english, 2015

90

Real-Time Transcription Initiation by E. coli RNA Polymerase in vitro and in vivo

Plochowietz, Anne, Llumigusin, Diego Duchi, Zawadzki, Pawel, El-Sagheer, Afaf H., Brown, Tom, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 43 KB

english, 2015

91

E. Coli RNA Polymerase Pauses during Initial Transcription

Bauer, David L.V., Duchi, Diego, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 42 KB

english, 2016

92

Single-Molecule Imaging of Transcription, Chromosome Organization, and DNA Repair in Live Bacteria

Stracy, Mathew, Lesterlin, Christian, Uphoff, Stephan, Zawadzki, Pawel, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 59 KB

english, 2016

93

The Localization and Action of Topoisomerase IV in Escherichia coli Chromosome Segregation Is Coordinated by the SMC Complex, MukBEF

Zawadzki, Pawel, Stracy, Mathew, Ginda, Katarzyna, Zawadzka, Katarzyna, Lesterlin, Christian, Kapanidis, Achillefs N., Sherratt, David J.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.43 MB

english, 2015

94

Solution-Based Single-Molecule FRET Studies of K+ Channel Gating in a Lipid Bilayer

Sadler, Emma E., Kapanidis, Achillefs N., Tucker, Stephen J.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 876 KB

english, 2016

95

Sample Preparation and Data Acquisition for μs-ALEX

Kapanidis, Achillefs, Majumdar, Devdoot, Heilemann, Mike, Nir, Eyal, Weiss, Shimon

Journal:

Cold Spring Harbor Protocols

Year:

2015

Language:

english

File:

PDF, 179 KB

english, 2015

96

Red light, green light: probing single molecules using alternating-laser excitation

Santoso, Yusdi, Hwang, Ling Chin, Le Reste, Ludovic, Kapanidis, Achillefs N.

Journal:

Biochemical Society Transactions

Year:

2008

Language:

english

File:

PDF, 464 KB

english, 2008

97

In vivo single-RNA tracking shows that most tRNA diffuses freely in live bacteria

Plochowietz, Anne, Farrell, Ian, Smilansky, Zeev, Cooperman, Barry S., Kapanidis, Achillefs N.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.32 MB

english, 2016

98

Single-molecule FRET reveals the pre-initiation and initiation conformations of influenza virus promoter RNA

Robb, Nicole C., te Velthuis, Aartjan J. W., Wieneke, Ralph, Tampé, Robert, Cordes, Thorben, Fodor, Ervin, Kapanidis, Achillefs N.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.82 MB

english, 2016

99

The role of the priming loop in influenza A virus RNA synthesis

te Velthuis, Aartjan J. W., Robb, Nicole C., Kapanidis, Achillefs N., Fodor, Ervin

Journal:

Nature Microbiology

Year:

2016

Language:

english

File:

PDF, 1.89 MB

english, 2016

100

Single-molecule imaging of UvrA and UvrB recruitment to DNA lesions in living Escherichia coli

Stracy, Mathew, Jaciuk, Marcin, Uphoff, Stephan, Kapanidis, Achillefs N., Nowotny, Marcin, Sherratt, David J., Zawadzki, Pawel

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.18 MB

english, 2016

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