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51

1N expansion in the interacting boson model II. The neutron-proton degree of freedom

S Kuyucak, I Morrison

Journal:

Annals of Physics

Year:

1989

Language:

english

File:

PDF, 2.08 MB

english, 1989

52

Rotor and IBA description of proton and neutron alignment in the Ba and Ce isotopes

Amand Faessler, S. Kuyucak, A. Petrovici, L. Petersen

Journal:

Nuclear Physics A

Year:

1985

Language:

english

File:

PDF, 835 KB

english, 1985

53

Description of transitional nuclei in the sdg boson model

V.-S. Lac, S. Kuyucak

Journal:

Nuclear Physics A

Year:

1992

Language:

english

File:

PDF, 1.43 MB

english, 1992

54

Magnetic moment measurements in 195Pt; a critical test of U(612) supersymmetry

G.J. Lampard, A.E. Stuchbery, H.H. Bolotin, S. Kuyucak

Journal:

Nuclear Physics A

Year:

1994

Language:

english

File:

PDF, 1.23 MB

english, 1994

55

Hexadecapole degree of freedom in the interacting boson model

Journal:

Nuclear Physics A

Year:

1994

Language:

english

File:

PDF, 540 KB

english, 1994

56

Measured magnetic moments of 21+ states in 190–198Pt and interacting boson model description of M1 systematics in the platinum isotopes

S.S. Anderssen, A.E. Stuchbery, S. Kuyucak

Journal:

Nuclear Physics A

Year:

1995

Language:

english

File:

PDF, 1.03 MB

english, 1995

57

Description of deformed nuclei in the sdg boson model

S.C. Li, S. Kuyucak

Journal:

Nuclear Physics A

Year:

1996

Language:

english

File:

PDF, 1.57 MB

english, 1996

58

Invalidity of continuum theories of electrolytes in nanopores

B. Corry, S. Kuyucak, S.H. Chung

Journal:

Chemical Physics Letters

Year:

2000

Language:

english

File:

PDF, 194 KB

english, 2000

59

Shape-phase transitions in mixed parity systems and the onset of octupole deformation

Journal:

Physics Letters B

Year:

1999

Language:

english

File:

PDF, 135 KB

english, 1999

60

Electromagnetic properties of low-excitation states in 191Ir and 193Ir and supersymmetry schemes

E. Bezakova, A.E. Stuchbery, H.H. Bolotin, W.A. Seale, S. Kuyucak, P. Van Isacker

Journal:

Nuclear Physics A

Year:

2000

Language:

english

File:

PDF, 299 KB

english, 2000

61

Permeation Models and Structure-Function Relationships in Ion Channels

Serdar Kuyucak, Shin-Ho Chung

Journal:

Journal of Biological Physics

Year:

2002

Language:

english

File:

PDF, 149 KB

english, 2002

62

Molecular dynamics simulations of membrane proteins

Turgut Baştuğ, Serdar Kuyucak

Journal:

Biophysical Reviews

Year:

2012

Language:

english

File:

PDF, 580 KB

english, 2012

63

Nucleon-nucleon scattering in a hybrid quark σ-model with center-of-mass corrections

S. Kuyucak, Amand Faessler

Journal:

Physics Letters B

Year:

1986

Language:

english

File:

PDF, 312 KB

english, 1986

64

M1 transitions in the (sdg) boson model

S. Kuyucak, I. Morrison

Journal:

Physics Letters B

Year:

1988

Language:

english

File:

PDF, 284 KB

english, 1988

65

g-Boson effects in the neutron-proton IBM from 1N expansion

S. Kuyucak, I. Morrison, Amand Faessler, A. Gelberg

Journal:

Physics Letters B

Year:

1988

Language:

english

File:

PDF, 314 KB

english, 1988

66

γ-unstable nuclei in the sdg boson model

S. Kuyucak, V-S. Lac, I. Morrison, B.R. Barrett

Journal:

Physics Letters B

Year:

1991

Language:

english

File:

PDF, 354 KB

english, 1991

67

Dynamic shape transitions in the interacting boson model

S. Kuyucak, V.-S. Lac, I. Morrison

Journal:

Physics Letters B

Year:

1991

Language:

english

File:

PDF, 420 KB

english, 1991

68

Shapes and phase transitions in generalized boson models

S. Kuyucak, I. Morrison

Journal:

Physics Letters B

Year:

1991

Language:

english

File:

PDF, 397 KB

english, 1991

69

Affinity and Selectivity of ShK Toxin for the Kv1 Potassium Channels from Free Energy Simulations

Rashid, M. Harunur, Kuyucak, Serdar

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 734 KB

english, 2012

70

A model of calcium channels

Ben Corry, Toby W. Allen, Serdar Kuyucak, Shin-Ho Chung

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2000

Language:

english

File:

PDF, 252 KB

english, 2000

71

Recent advances in ion channel research

Shin-Ho Chung, Serdar Kuyucak

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2002

Language:

english

File:

PDF, 381 KB

english, 2002

72

A C-terminally amidated analogue of ShK is a potent and selective blocker of the voltage-gated potassium channel Kv1.3

Michael W. Pennington, M. Harunur Rashid, Rajeev B. Tajhya, Christine Beeton, Serdar Kuyucak, Raymond S. Norton

Journal:

Year:

2012

Language:

english

File:

PDF, 882 KB

english, 2012

73

Mechanisms of Permeation and Selectivity in Calcium Channels

Corry, Ben, Allen, Toby W., Kuyucak, Serdar, Chung, Shin-Ho

Journal:

Biophysical Journal

Year:

2001

Language:

english

File:

PDF, 316 KB

english, 2001

74

Free energy simulations of single and double ion occupancy in gramicidin A

Baştuğ, Turgut, Kuyucak, Serdar

Journal:

The Journal of Chemical Physics

Year:

2007

Language:

english

File:

PDF, 1.25 MB

english, 2007

75

Tests of Continuum Theories as Models of Ion Channels. I. Poisson−Boltzmann Theory versus Brownian Dynamics

Moy, Glenn, Corry, Ben, Kuyucak, Serdar, Chung, Shin-Ho

Journal:

Biophysical Journal

Year:

2000

Language:

english

File:

PDF, 224 KB

english, 2000

76

Tests of Continuum Theories as Models of Ion Channels. II. Poisson–Nernst–Planck Theory versus Brownian Dynamics

Corry, Ben, Kuyucak, Serdar, Chung, Shin-Ho

Journal:

Biophysical Journal

Year:

2000

Language:

english

File:

PDF, 357 KB

english, 2000

77

Continuum Electrostatics Fails to Describe Ion Permeation in the Gramicidin Channel

Edwards, Scott, Corry, Ben, Kuyucak, Serdar, Chung, Shin-Ho

Journal:

Biophysical Journal

Year:

2002

Language:

english

File:

PDF, 433 KB

english, 2002

78

Modeling Diverse Range of Potassium Channels with Brownian Dynamics

Chung, Shin-Ho, Allen, Toby W., Kuyucak, Serdar

Journal:

Biophysical Journal

Year:

2002

Language:

english

File:

PDF, 496 KB

english, 2002

79

Conducting-State Properties of the KcsA Potassium Channel from Molecular and Brownian Dynamics Simulations

Chung, Shin-Ho, Allen, Toby W., Kuyucak, Serdar

Journal:

Biophysical Journal

Year:

2002

Language:

english

File:

PDF, 985 KB

english, 2002

80

Reservoir Boundaries in Brownian Dynamics Simulations of Ion Channels

Corry, Ben, Hoyles, Matthew, Allen, Toby W., Walker, Michael, Kuyucak, Serdar, Chung, Shin-Ho

Journal:

Biophysical Journal

Year:

2002

Language:

english

File:

PDF, 282 KB

english, 2002

81

Role of the Dielectric Constants of Membrane Proteins and Channel Water in Ion Permeation

Baştuğ, Turgut, Kuyucak, Serdar

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 205 KB

english, 2003

82

Functional Properties of Threefold and Fourfold Channels in Ferritin Deduced from Electrostatic Calculations

Takahashi, Takuya, Kuyucak, Serdar

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 176 KB

english, 2003

83

Gramicidin A Channel as a Test Ground for Molecular Dynamics Force Fields

Allen, Toby W., Baştuğ, Turgut, Kuyucak, Serdar, Chung, Shin-Ho

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 309 KB

english, 2003

84

Molecular and Brownian dynamics study of ion selectivity and conductivity in the potassium channel

T.W. Allen, M. Hoyles, S. Kuyucak, S.H. Chung

Journal:

Chemical Physics Letters

Year:

1999

Language:

english

File:

PDF, 276 KB

english, 1999

85

Mechanism and Energetics of Charybdotoxin Unbinding from a Potassium Channel from Molecular Dynamics Simulations

Chen, Po-chia, Kuyucak, Serdar

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 1.43 MB

english, 2009

86

Importance of the Peptide Backbone Description in Modeling the Selectivity Filter in Potassium Channels

Baştuğ, Turgut, Kuyucak, Serdar

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 2.13 MB

english, 2009

87

Conformational Docking of Multiple Toxins Against Kv1-Channels Highlight Key Motifs For Selectivity

Chen, Po-chia, Kuyucak, Serdar

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 37 KB

english, 2010

88

Comparative Study of the Energetics of Ion Permeation in Kv1.2 and KcsA Potassium Channels

Baştuğ, Turgut, Kuyucak, Serdar

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 298 KB

english, 2011

89

Accurate Determination of the Binding Free Energy for KcsA-Charybdotoxin Complex from the Potential of Mean Force Calculations with Restraints

Chen, Po-Chia, Kuyucak, Serdar

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 600 KB

english, 2011

90

Free Energy Simulations of Ligand Binding to the Aspartate Transporter GltPh

Heinzelmann, Germano, Baştuğ, Turgut, Kuyucak, Serdar

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 532 KB

english, 2011

91

Energy barrier presented to ions by the vestibule of the biological membrane channel

Hoyles, M., Kuyucak, S., Chung, S.H.

Journal:

Biophysical Journal

Year:

1996

Language:

english

File:

PDF, 1.22 MB

english, 1996

92

Study of Ionic Currents across a Model Membrane Channel Using Brownian Dynamics

Chung, Shin-Ho, Hoyles, Matthew, Allen, Toby, Kuyucak, Serdar

Journal:

Biophysical Journal

Year:

1998

Language:

english

File:

PDF, 273 KB

english, 1998

93

Analytical Solutions of Poisson's Equation for Realistic Geometrical Shapes of Membrane Ion Channels

Kuyucak, Serdar, Hoyles, Matthew, Chung, Shin-Ho

Journal:

Biophysical Journal

Year:

1998

Language:

english

File:

PDF, 370 KB

english, 1998

94

Brownian Dynamics Study of Ion Transport in the Vestibule of Membrane Channels

Li, Siu Cheung, Hoyles, Matthew, Kuyucak, Serdar, Chung, Shin-Ho

Journal:

Biophysical Journal

Year:

1998

Language:

english

File:

PDF, 181 KB

english, 1998

95

Molecular Dynamics Study of the KcsA Potassium Channel

Allen, Toby W., Kuyucak, Serdar, Chung, Shin-Ho

Journal:

Biophysical Journal

Year:

1999

Language:

english

File:

PDF, 335 KB

english, 1999

96

Permeation of Ions Across the Potassium Channel: Brownian Dynamics Studies

Chung, Shin-Ho, Allen, Toby W., Hoyles, Matthew, Kuyucak, Serdar

Journal:

Biophysical Journal

Year:

1999

Language:

english

File:

PDF, 270 KB

english, 1999

97

Role of Protein Flexibility in Ion Permeation: A Case Study in Gramicidin A

Baştuğ, Turgut, Gray-Weale, Angus, Patra, Swarna M., Kuyucak, Serdar

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 364 KB

english, 2006

98

Energetics of Ion Permeation, Rejection, Binding, and Block in Gramicidin A from Free Energy Simulations

Baştuğ, Turgut, Kuyucak, Serdar

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 155 KB

english, 2006

99

Potential of mean force calculations of ligand binding to ion channels from Jarzynski’s equality and umbrella sampling

Baştuğ, Turgut, Chen, Po-Chia, Patra, Swarna M., Kuyucak, Serdar

Journal:

The Journal of Chemical Physics

Year:

2008

Language:

english

File:

PDF, 1.19 MB

english, 2008

100

Dissociation of NaCl in water from ab initio molecular dynamics simulations

Timko, Jeff, Bucher, Denis, Kuyucak, Serdar

Journal:

The Journal of Chemical Physics

Year:

2010

Language:

english

File:

PDF, 1.04 MB

english, 2010

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