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51

Ligand-Induced Conformational Changes in Tetrameric IP3R1 Revealed by Single-Particle Cryo-EM

Fan, Guizhen, Popova, Olga B., Ludtke, Steven J., Serysheva, Irina I.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 46 KB

english, 2014

52

Determining Orientation in Cryoem Single Particle Analysis

James, Regis A., Ludtke, Steven J.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 33 KB

english, 2010

53

Cryo-EM Studies of RyR1 Channel in Detergent-Free Aqueous Environment

Popova, Olga B., Fan, Guizhen, Baker, Mariah R., Jakana, Joanita, Chiu, Wah, Ludtke, Steven J., Serysheva, Irina I.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 46 KB

english, 2014

54

Emdatabank: Unified Data Resource for 3DEM

Lawson, Catherine, Patwardhan, Ardan, Pintilie, Grigore D., Sanz Garcia, Eduardo, Lagerstedt, Ingvar, Baker, Matthew L., Sala, Raul, Ludtke, Steven J., Berman, Helen M., Kleywegt, Gerard, Chiu, Wah

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 56 KB

english, 2013

55

Validation of Cryo-EM Structure of IP3R1 Channel

Murray, Stephen C., Flanagan, John, Popova, Olga B., Chiu, Wah, Ludtke, Steven J., Serysheva, Irina I.

Journal:

Year:

2013

Language:

english

File:

PDF, 2.06 MB

english, 2013

56

4.0 Å Cryo-EM Structure of the Mammalian Chaperonin: TRiC/CCT

Cong, Yao, Baker, Matthew, Jakana, Joanita, Woolford, David, Reissmann, Stefanie, Ludtke, Steven J., Frydman, Judith, Chiu, Wah

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 52 KB

english, 2010

57

The Molecular Architecture of Human Low Density Lipoprotein and Bound Receptor Revealed by Electron Cryo-Microscopy

Ren, Gang, Rudenko, Gabby, Ludtke, Steven J., Deisenhofer, Johann, Pownall, Henry J., Chiu, Wah

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 50 KB

english, 2010

58

Disruption of Human Plasma High-Density Lipoproteins by Streptococcal Serum Opacity Factor Requires Labile Apolipoprotein A-I †

Han, Mikyung, Gillard, Baiba K., Courtney, Harry S., Ward, Kathryn, Rosales, Corina, Khant, Htet, Ludtke, Steven J., Pownall, Henry J.

Journal:

Year:

2009

Language:

english

File:

PDF, 3.62 MB

english, 2009

59

Discrete Structure of an RNA Folding Intermediate Revealed by Cryo-electron Microscopy

Baird, Nathan J., Ludtke, Steven J., Khant, Htet, Chiu, Wah, Pan, Tao, Sosnick, Tobin R.

Journal:

Journal of the American Chemical Society

Year:

2010

Language:

english

File:

PDF, 873 KB

english, 2010

60

Zernike phase-contrast electron cryotomography applied to marine cyanobacteria infected with cyanophages

Dai, Wei, Fu, Caroline, Khant, Htet A, Ludtke, Steven J, Schmid, Michael F, Chiu, Wah

Journal:

Nature Protocols

Year:

2014

Language:

english

File:

PDF, 2.76 MB

english, 2014

61

Data management challenges in three-dimensional EM

Patwardhan, Ardan, Carazo, José-Maria, Carragher, Bridget, Henderson, Richard, Heymann, J Bernard, Hill, Emma, Jensen, Grant J, Lagerstedt, Ingvar, Lawson, Catherine L, Ludtke, Steven J, Mastronarde,

Journal:

Nature Structural and Molecular Biology

Year:

2012

Language:

english

File:

PDF, 874 KB

english, 2012

62

Structure of a Biologically Active Estrogen Receptor-Coactivator Complex on DNA

Yi, Ping, Wang, Zhao, Feng, Qin, Pintilie, Grigore D., Foulds, Charles E., Lanz, Rainer B., Ludtke, Steven J., Schmid, Michael F., Chiu, Wah, O’Malley, Bert W.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.57 MB

english, 2015

63

MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography

Cheng, Anchi, Henderson, Richard, Mastronarde, David, Ludtke, Steven J., Schoenmakers, Remco H.M., Short, Judith, Marabini, Roberto, Dallakyan, Sargis, Agard, David, Winn, Martyn

Journal:

Journal of Structural Biology

Year:

2015

Language:

english

File:

PDF, 359 KB

english, 2015

64

Symmetry-free cryo-EM structures of the chaperonin TRiC along its ATPase-driven conformational cycle

Cong, Yao, Schröder, Gunnar F, Meyer, Anne S, Jakana, Joanita, Ma, Boxue, Dougherty, Matthew T, Schmid, Michael F, Reissmann, Stefanie, Levitt, Michael, Ludtke, Steven L, Frydman, Judith, Chiu, Wah

Journal:

The EMBO Journal

Year:

2012

Language:

english

File:

PDF, 3.31 MB

english, 2012

65

Single particle tomography in EMAN2

Galaz-Montoya, Jesús G., Flanagan, John, Schmid, Michael F., Ludtke, Steven J.

Journal:

Journal of Structural Biology

Year:

2015

Language:

english

File:

PDF, 3.35 MB

english, 2015

66

An atomic model of brome mosaic virus using direct electron detection and real-space optimization

Wang, Zhao, Hryc, Corey F., Bammes, Benjamin, Afonine, Pavel V., Jakana, Joanita, Chen, Dong-Hua, Liu, Xiangan, Baker, Matthew L., Kao, Cheng, Ludtke, Steven J., Schmid, Michael F., Adams, Paul D., Ch

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 2.97 MB

english, 2014

67

4.0-Å resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement

Yao Cong, Matthew L. Baker, Joanita Jakana, David Woolford, Erik J. Miller, Stefanie Reissmann, Ramya N. Kumar, Alyssa M. Redding-Johanson, Tanveer S. Batth, Aindrila Mukhopadhyay, Steven J. Ludtke, J

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.88 MB

english, 2010

68

Erratum: Structural diversity of supercoiled DNA

Irobalieva, Rossitza N., Fogg, Jonathan M., Catanese, Daniel J., Sutthibutpong, Thana, Chen, Muyuan, Barker, Anna K., Ludtke, Steven J., Harris, Sarah A., Schmid, Michael F., Chiu, Wah, Zechiedrich, L

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 132 KB

english, 2015

69

Model of Human Low-Density Lipoprotein and Bound Receptor Based on CryoEM

Gang Ren, Gabby Rudenko, Steven J. Ludtke, Johann Deisenhofer, Wah Chiu, Henry J. Pownall and Richard J. Havel

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.76 MB

english, 2010

70

Direct Measurement of the Structure of Reconstituted High Density Lipoproteins by Cryo-EM

Murray, Stephen C., Gillard, Baiba K., Ludtke, Steven J., Pownall, Henry J.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 1.20 MB

english, 2015

71

EMDataBank unified data resource for 3DEM

Lawson, Catherine L., Patwardhan, Ardan, Baker, Matthew L., Hryc, Corey, Garcia, Eduardo Sanz, Hudson, Brian P., Lagerstedt, Ingvar, Ludtke, Steven J., Pintilie, Grigore, Sala, Raul, Westbrook, John D

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 2.42 MB

english, 2016

72

Computational Tools to Improve Visualization by Cryo-Electron Tomography

Galaz-Montoya, Jesus G., Hecksel, Corey W., Chin, Jessica, Wang, Rui, Lewis, Cannon W., Haemmerle, Monika, Schmid, Michael F., Ludtke, Steven J., Sood, Anil K., Chiu, Wah

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 47 KB

english, 2016

73

The Electron Microscopy eXchange (EMX) initiative

Marabini, Roberto, Ludtke, Steven J., Murray, Stephen C., Chiu, Wah, de la Rosa-Trevín, Jose M., Patwardhan, Ardan, Heymann, J. Bernard, Carazo, Jose M.

Journal:

Journal of Structural Biology

Year:

2016

Language:

english

File:

PDF, 1.09 MB

english, 2016

74

Alignment algorithms and per-particle CTF correction for single particle cryo-electron tomography

Galaz-Montoya, Jesús G., Hecksel, Corey W., Baldwin, Philip R., Wang, Eryu, Weaver, Scott C., Schmid, Michael F., Ludtke, Steven J., Chiu, Wah

Journal:

Journal of Structural Biology

Year:

2016

Language:

english

File:

PDF, 3.15 MB

english, 2016

75

High resolution single particle refinement in EMAN2.1

Bell, James M., Chen, Muyuan, Baldwin, Philip R., Ludtke, Steven J.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.05 MB

english, 2016

76

EMEN2: An Object Oriented Database and Electronic Lab Notebook

Rees, Ian, Langley, Ed, Chiu, Wah, Ludtke, Steven J.

Journal:

Microscopy and Microanalysis

Year:

2013

Language:

english

File:

PDF, 732 KB

english, 2013

77

Object Oriented Database and Electronic Notebook for Transmission Electron Microscopy

Ludtke, Steven J., Nason, Laurie, Tu, Haili, Peng, Liwei, Chiu, Wah

Journal:

Microscopy and Microanalysis

Year:

2003

Language:

english

File:

PDF, 961 KB

english, 2003

78

GroEL Structure at 6 Å Resolution Using Electron Cryomicroscopy and EMAN

Ludtke, Steven J, Chen, Dong-Hua, Song, Jiu-Li, Chuang, David T, Chiu, Wah

Journal:

Microscopy and Microanalysis

Year:

2004

Language:

english

File:

PDF, 428 KB

english, 2004

79

Application of Deep Learning to CryoEM Heterogeneity Analysis

Chen, Muyuan, Baker, Matthew L., Ludtke, Steven J.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 41 KB

english, 2016

80

De Novo modeling in cryo-EM density maps with Pathwalking

Chen, Muyuan, Baldwin, Philip R., Ludtke, Steven J., Baker, Matthew L.

Journal:

Journal of Structural Biology

Year:

2016

Language:

english

File:

PDF, 2.83 MB

english, 2016

81

A Near-Atomic Structure of the Dark Apoptosome Provides Insight into Assembly and Activation

Cheng, Tat Cheung, Akey, Ildikó V., Yuan, Shujun, Yu, Zhiheng, Ludtke, Steven J., Akey, Christopher W.

Journal:

Year:

2017

Language:

english

File:

PDF, 9.90 MB

english, 2017

82

Characterization of Cryo-EM Motion Correction Algorithms for Movie-Mode Imaging

Bell, James M., Forrester, Isaac, Jakana, Joanita, Ludtke, Steven J.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 43 KB

english, 2017

83

The advent of structural biology in situ by single particle cryo-electron tomography

Galaz-Montoya, Jesús G., Ludtke, Steven J.

Journal:

Biophysics Reports

Year:

2017

Language:

english

File:

PDF, 4.17 MB

english, 2017

84

eLS || Electron Cryomicroscopy and Three-dimensional Computer Reconstruction of Biological Molecules

Ludtke, Steven J

Year:

2001

Language:

english

File:

PDF, 742 KB

english, 2001

85

Structural and Functional Impacts of ER Coactivator Sequential Recruitment

Yi, Ping, Wang, Zhao, Feng, Qin, Chou, Chao-Kai, Pintilie, Grigore D., Shen, Hong, Foulds, Charles E., Fan, Guizhen, Serysheva, Irina, Ludtke, Steven J., Schmid, Michael F., Hung, Mien-Chie, Chiu, Wah

Journal:

Year:

2017

Language:

english

File:

PDF, 2.91 MB

english, 2017

86

Convolutional neural networks for automated annotation of cellular cryo-electron tomograms

Chen, Muyuan, Dai, Wei, Sun, Stella Y, Jonasch, Darius, He, Cynthia Y, Schmid, Michael F, Chiu, Wah, Ludtke, Steven J

Journal:

Year:

2017

Language:

english

File:

PDF, 3.68 MB

english, 2017

87

New Strategies for Improving CryoEM Single Particle Analysis in EMAN2.2

Ludtke, Steven J., Durmaz, Tunay, Chen, Muyuan, Bell, James M.

Journal:

Microscopy and Microanalysis

Year:

2017

Language:

english

File:

PDF, 840 KB

english, 2017

88

Going Deeper in Cryo Electron Tomography with Neural Networks

Chen, Muyuan, Dai, Wei, Sun, Stella Y., Schmid, Michael F., Chiu, Wah, Ludtke, Steven J.

Journal:

Microscopy and Microanalysis

Year:

2017

Language:

english

File:

PDF, 488 KB

english, 2017

89

Structure and Functional Anatomy of the Nuclear Pore Complex

Joong Kim, Seung, Fernandez-Martinez, Javier, Nudelman, Ilona, Shi, Yi, Zhang, Wenzhu, Raveh, Barak, Upla, Paula, Chemmama, Ilan E., Pellarin, Riccardo, Echeverria, Ignacia, Ludtke, Steven J., Akey, C

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 46 KB

english, 2018

90

Visualizing Individual RuBisCO and its Assembly into Carboxysomes in Marine Cyanobacteria by Cryo-Electron Tomography

Dai, Wei, Chen, Muyuan, Myers, Christopher, Ludtke, Steven J., Montgomery Pettitt, B., King, Jonathan A., Schmid, Michael F., Chiu, Wah

Journal:

Journal of Molecular Biology

Year:

2018

File:

PDF, 6.26 MB

2018

91

Visualizing Individual RuBisCO and its Assembly into Carboxysomes in Marine Cyanobacteria by Cryo-Electron Tomography

Dai, Wei, Chen, Muyuan, Myers, Christopher, Ludtke, Steven J., Montgomery Pettitt, B., King, Jonathan A., Schmid, Michael F., Chiu, Wah

Journal:

Journal of Molecular Biology

Year:

2018

Language:

english

File:

PDF, 6.26 MB

english, 2018

92

New software tools in EMAN2 inspired by EMDatabank map challenge

Bell, James M., Chen, Muyuan, Durmaz, Tunay, Fluty, Adam C., Ludtke, Steven J.

Journal:

Journal of Structural Biology

Year:

2018

Language:

english

File:

PDF, 3.37 MB

english, 2018

93

Cryo-EM reveals ligand induced allostery underlying InsP3R channel gating

Fan, Guizhen, Baker, Mariah R., Wang, Zhao, Seryshev, Alexander B., Ludtke, Steven J., Baker, Matthew L., Serysheva, Irina I.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.85 MB

english, 2018

94

Modeling Protein Structure in Macromolecular Assemblies at Near Atomic Resolutions

Baker, Matthew L., Chen, Muyuan, Baldwin, Philip R., Ludtke, Steven J., Chiu, Wah

Journal:

Microscopy and Microanalysis

Year:

2015

Language:

english

File:

PDF, 2.15 MB

english, 2015

95

IP3R1 - Assessing Map Interpretability at Near Atomic Resolution

Ludtke, Steven J., Fan, Guizhen, Baker, Matthew L., Wang, Zhao, Baker, Mariah R., Murray, Stephen, Synyagovsky, Pavel A., Chiu, Wah, Serysheva, Irina I.

Journal:

Microscopy and Microanalysis

Year:

2015

Language:

english

File:

PDF, 917 KB

english, 2015

96

Bispectral Invariants for Image Classification and Alignment in CryoEM

Baldwin, Philip R., Ludtke, Steven J.

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 38 KB

english, 2019

97

In situ structure and assembly of the multidrug efflux pump AcrAB-TolC

Shi, Xiaodong, Chen, Muyuan, Yu, Zhili, Bell, James M., Wang, Hans, Forrester, Isaac, Villarreal, Heather, Jakana, Joanita, Du, Dijun, Luisi, Ben F., Ludtke, Steven J., Wang, Zhao

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 1.98 MB

english, 2019

98

A Complete Workflow for Cellular Tomography and Subtomogram Averaging in EMAN2

Bell, James M., Chen, Muyuan, Fluty, Adam, Ludtke, Steven J.

Journal:

Microscopy and Microanalysis

Year:

2018

Language:

english

File:

PDF, 366 KB

english, 2018

99

A Complete Workflow for Cellular Tomography and Subtomogram Averaging in EMAN2

Bell, James M., Chen, Muyuan, Fluty, Adam, Ludtke, Steven J.

Journal:

Microscopy and Microanalysis

Year:

2018

File:

PDF, 366 KB

2018

100

Structural and functional analyses of photosystem II in the marine diatom Phaeodactylum tricornutum

Levitan, Orly, Chen, Muyuan, Kuang, Xuyuan, Cheong, Kuan Yu, Jiang, Jennifer, Banal, Melissa, Nambiar, Nikhita, Gorbunov, Maxim Y., Ludtke, Steven J., Falkowski, Paul G., Dai, Wei

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

File:

PDF, 2.00 MB

2019