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1

Frequent loss of the 11q14-24 region in chronic lymphocytic leukemia: A study by comparative genomic hybridization

Ritva Karhu, Sakari Knuutila, Olli-P. Kallioniemi, Sanna Siitonen, Risto Aine, Leena Vilpo, Juhani Vilpo

Journal:

Genes, Chromosomes and Cancer

Year:

1997

Language:

english

File:

PDF, 57 KB

english, 1997

2

Comparative genomic hybridization reveals frequent gains of 20q, 8q, 11q, 12p, and 17q, and losses of 18q, 9p, and 15q in pancreatic cancer

Eija H. Mahlamäki, Mattias Höglund, Ludmila Gorunova, Ritva Karhu, Sigmund Dawiskiba, Åke Andrén-Sandberg, Olli-P. Kallioniemi, Bertil Johansson

Journal:

Genes, Chromosomes and Cancer

Year:

1997

Language:

english

File:

PDF, 111 KB

english, 1997

3

Molecular cytogenetics of primary breast cancer by CGH

Mika Tirkkonen, Minna Tanner, Ritva Karhu, Anne Kallioniemi, Jorma Isola, Olli-P. Kallioniemi

Journal:

Genes, Chromosomes and Cancer

Year:

1998

Language:

english

File:

PDF, 94 KB

english, 1998

4

Somatic genetic alterations in BRCA2-associated and sporadic male breast cancer

Mika Tirkkonen, Tommi Kainu, Niklas Loman, Óskar T. Jóhannsson, Håkan Olsson, Rósa B. Barkardóttir, Olli-P. Kallioniemi, Åke Borg

Journal:

Genes, Chromosomes and Cancer

Year:

1999

Language:

english

File:

PDF, 254 KB

english, 1999

5

Genetic changes in familial prostate cancer by comparative genomic hybridization

Annika Rökman, Pasi A. Koivisto, Mika P. Matikainen, Tuula Kuukasjärvi, Marita Poutiainen, Heikki J. Helin, Ritva Karhu, Olli-P. Kallioniemi, Johanna Schleutker

Journal:

Year:

2001

Language:

english

File:

PDF, 142 KB

english, 2001

6

Improved technique for analysis of formalin-fixed, paraffin-embedded tumors by fluorescence in situ hybridization

Eija Hyytinen, Tapio Visakorpi, Anne Kallioniemi, Olli-P. Kallioniemi, Jorma J. Isola

Journal:

Cytometry Part A

Year:

1994

Language:

english

File:

PDF, 699 KB

english, 1994

7

Automated peak detection and cell cycle analysis of flow cytometric DNA histograms

Olli-P. Kallioniemi, Tapio Visakorpi, Kaija Holli, Jorma J. Isola, Peter S. Rabinovitch

Journal:

Cytometry Part A

Year:

1994

Language:

english

File:

PDF, 611 KB

english, 1994

8

Computer image analysis of comparative genomic hybridization

Jim Piper, Denis Rutovitz, Damir Sudar, Anne Kallioniemi, Olli-P. Kallioniemi, Frederic M. Waldman, Joe W. Gray, Dan Pinkel

Journal:

Cytometry Part A

Year:

1995

Language:

english

File:

PDF, 3.37 MB

english, 1995

9

Hardware and software requirements for quantitative analysis of comparative genomic hybridization

Stanislas du Manoir, Olli-P. Kallioniemi, Peter Lichter, Jim Piper, P. A. Benedetti, A. D. Carothers, J. A. Fantes, J. M. García-Sagredo, T. Gerdes, M. Giollant, B. Hemery, J. Isola, J. Maahr, H. Morr

Journal:

Cytometry Part A

Year:

1995

Language:

english

File:

PDF, 562 KB

english, 1995

10

Cloning of BCAS3 (17q23) and BCAS4 (20q13) genes that undergo amplification, overexpression, and fusion in breast cancer

Maarit Bärlund, Outi Monni, J. Donald Weaver, Päivikki Kauraniemi, Guido Sauter, Mervi Heiskanen, Olli-P. Kallioniemi, Anne Kallioniemi

Journal:

Genes, Chromosomes and Cancer

Year:

2002

Language:

english

File:

PDF, 884 KB

english, 2002

11

Optimizing comparative genomic hybridization for analysis of DNA sequence copy number changes in solid tumors

Olli-P. Kallioniemi, Anne Kallioniemi, Jim Piper, Jorma Isola, Fred M. Waldman, Joe W. Gray, Dan Pinkel

Journal:

Genes, Chromosomes and Cancer

Year:

1994

Language:

english

File:

PDF, 1.07 MB

english, 1994

12

Identification of gains and losses of DNA sequences in primary bladder cancer by comparative genomic hybridization

Anne Kallioniemi, Olli-P. Kallioniemi, Gil Citro, Guido Sauter, Sandy Devries, Russell Kerschmann, Peter Caroll, Fred Waldman

Journal:

Genes, Chromosomes and Cancer

Year:

1995

Language:

english

File:

PDF, 602 KB

english, 1995

13

CHEK2 1100delC is not a risk factor for male breast cancer population

Kirsi Syrjäkoski, Tuula Kuukasjärvi, Anssi Auvinen, Olli-P Kallioniemi

Journal:

International Journal of Cancer

Year:

2004

Language:

english

File:

PDF, 50 KB

english, 2004

14

Tissue microarrays (TMAs) for high-throughput molecular pathology research

Antonio Nocito, Juha Kononen, Olli-P. Kallioniemi, Guido Sauter

Journal:

International Journal of Cancer

Year:

2001

Language:

english

File:

PDF, 545 KB

english, 2001

15

CHEK2 variant I157T may be associated with increased breast cancer risk

Outi Kilpivaara, Pia Vahteristo, Jacob Falck, Kirsi Syrjäkoski, Hannaleena Eerola, Douglas Easton, Jirina Bartkova, Jiri Lukas, Päivi Heikkilä, Kristiina Aittomäki, Kaija Holli, Carl Blomqvist, Olli-P

Journal:

International Journal of Cancer

Year:

2004

Language:

english

File:

PDF, 173 KB

english, 2004

16

Association of C-erbB-2 protein over-expression with high rate of cell proliferation, increased risk of visceral metastasis and poor long-term survival in breast cancer

Olli-P. Kallioniemi, Kaija Holli, Tapio Visakorpi, Timo Koivula, Heikki H. Helin, Jorma J. Isola

Journal:

International Journal of Cancer

Year:

1991

Language:

english

File:

PDF, 818 KB

english, 1991

17

Clinical and functional target validation using tissue and cell microarrays

Spyro Mousses, Anne Kallioniemi, Päivikki Kauraniemi, Abdel Elkahloun, Olli-P Kallioniemi

Journal:

Current Opinion in Chemical Biology

Year:

2002

Language:

english

File:

PDF, 69 KB

english, 2002

18

Inter-laboratory comparison of DNA flow cytometric results from paraffin-embedded breast carcinomas

Olli-P. Kallioniemi, Heikki Joensuu, Pekka Klemi, Timo Koivula

Journal:

Breast Cancer Research and Treatment

Year:

1990

Language:

english

File:

PDF, 231 KB

english, 1990

19

Androgen receptor CAG polymorphism and prostate cancer risk

Nina Mononen, Tarja Ikonen, Ville Autio, Annika Rökman, Mika P. Matikainen, Teuvo L. Tammela, Olli-P. Kallioniemi, Pasi A. Koivisto, Johanna Schleutker

Journal:

Year:

2002

Language:

english

File:

PDF, 62 KB

english, 2002

20

cDNA and tissue microarray technologies for high-throughput molecular oncology research

Kallioniemi, Olli-P.

Journal:

Nature Genetics

Year:

1999

Language:

english

File:

PDF, 116 KB

english, 1999

21

Linking chromosomal clues

Kallioniemi, Olli-P.

Journal:

Nature Genetics

Year:

1997

File:

PDF, 217 KB

1997

22

In vivo amplification of the androgen receptor gene and progression of human prostate cancer

Koivisto, Pasi, Tanner, Minna, Keinänen, Riitta, Palmberg, Christian, Palotie, Aarno, Tammela, Teuvo, Isola, Jorma, Kallioniemi, Olli-P., Visakorpi, Tapio, Hyytinen, Eija

Journal:

Nature Genetics

Year:

1995

File:

PDF, 715 KB

1995

23

Tissue microarrays for high-throughput molecular profiling of tumor specimens

Kononen, Juha, Bubendorf, Lukas, Kallionimeni, Anne, Bärlund, Maarit, Schraml, Peter, Leighton, Stephen, Torhorst, Joachim, Mihatsch, Michael J, Sauter, Guido, Kallionimeni, Olli-P.

Journal:

Nature Medicine

Year:

1998

File:

PDF, 766 KB

1998

24

Failure of hormone therapy in prostate cancer involves systematic restoration of androgen responsive genes and activation of rapamycin sensitive signaling

Mousses, Spyro, Wagner, Urs, Chen, Yidong, Kim, J W, Bubendorf, Lukas, Bittner, Michael, Pretlow, Thomas, Elkahloun, Abdel G, Trepel, Jane B, Kallioniemi, Olli-P

Journal:

Year:

2001

Language:

english

File:

PDF, 572 KB

english, 2001

25

Loss of the tight junction protein claudin-7 correlates with histological grade in both ductal carcinoma in situ and invasive ductal carcinoma of the breast

Kominsky, Scott L, Argani, Pedram, Korz, Dorian, Evron, Ella, Raman, Venu, Garrett, Elizabeth, Rein, Alan, Sauter, Guido, Kallioniemi, Olli-P, Sukumar, Saraswati

Journal:

Year:

2003

Language:

english

File:

PDF, 757 KB

english, 2003

26

Relatives of Prostate Cancer Patients have an Increased Risk of Prostate and Stomach Cancers: A Population-Based, Cancer Registry study in Finland

Mika P. Matikainen, Eero Pukkala, Johanna Schleutker, Teuvo L. J. Tammela, Pasi Koivisto, Risto Sankila, Olli-P. Kallioniemi

Journal:

Cancer Causes & Control

Year:

2001

Language:

english

File:

PDF, 100 KB

english, 2001

27

Androgen Receptor Gene Alterations in Finnish Male Breast Cancer

Kirsi Syrjäkoski, Eija-R. Hyytinen, Tuula Kuukasjärvi, Anssi Auvinen, Olli-P. Kallioniemi, Tommi Kainu, Pasi A. Koivisto

Journal:

Breast Cancer Research and Treatment

Year:

2003

Language:

english

File:

PDF, 57 KB

english, 2003

28

Inferring Tree Models for Oncogenesis from Comparative Genome Hybridization Data

DESPER, RICHARD, JIANG, FENG, KALLIONIEMI, OLLI-P., MOCH, HOLGER, PAPADIMITRIOU, CHRISTOS H., SCHÄFFER, ALEJANDRO A.

Journal:

Journal of Computational Biology

Year:

1999

Language:

english

File:

PDF, 1.91 MB

english, 1999

29

From chromosomal alterations to target genes for therapy: integrating cytogenetic and functional genomic views of the breast cancer genome

Outi Monni, Elizabeth Hyman, Spyro Mousses, Maarit Barlund, Anne Kallioniemi, Olli-P Kallioniemi

Journal:

Seminars in Cancer Biology

Year:

2001

Language:

english

File:

PDF, 2.78 MB

english, 2001

30

Comparative genomic hybridization gaining in popularity

Olli-P. Kallioniemi

Journal:

Trends in Genetics

Year:

1996

Language:

english

File:

PDF, 223 KB

english, 1996

31

Genome screening by comparative genomic hybridization

Farahnaz Forozan, Ritva Karhu, Juha Kononen, Anne Kallioniemi, Olli-P. Kallioniemi

Journal:

Trends in Genetics

Year:

1997

Language:

english

File:

PDF, 376 KB

english, 1997

32

Amplified genes as therapeutic targets in cancer

Mark Basik, Natasha J. Caplen, Olli-P. Kallioniemi, Spyro Mousses

Journal:

Year:

2003

Language:

english

File:

PDF, 2.33 MB

english, 2003

33

Gene Copy Number Analysis by Fluorescencein SituHybridization and Comparative Genomic Hybridization

Anne Kallioniemi, Tapio Visakorpi, Ritva Karhu, Dan Pinkel, Olli-P. Kallioniemi

Journal:

Year:

1996

Language:

english

File:

PDF, 160 KB

english, 1996

34

A physical map of chromosome 20 established using fluorescence in situ hybridization and digital image analysis

Trond Stokke, Colin Collins, Wen-Lin Kuo, David Kowbel, Farideh Shadravan, Minna Tanner, Anne Kallioniemi, Olli-P. Kallioniemi, Daniel Pinkel, Larry Deaven, Joe W. Gray

Journal:

Year:

1995

Language:

english

File:

PDF, 494 KB

english, 1995

35

Are data from different gene expression microarray platforms comparable?

Anna-Kaarina Järvinen, Sampsa Hautaniemi, Henrik Edgren, Petri Auvinen, Janna Saarela, Olli-P. Kallioniemi, Outi Monni

Journal:

Year:

2004

Language:

english

File:

PDF, 208 KB

english, 2004

36

Tissue Microarrays for Rapid Linking of Molecular Changes to Clinical Endpoints

Joachim Torhorst, Christoph Bucher, Juha Kononen, Philippe Haas, Markus Zuber, Ossi R. Köchli, Frank Mross, Holger Dieterich, Holger Moch, Michael Mihatsch, Olli-P. Kallioniemi, Guido Sauter

Journal:

The American Journal of Pathology

Year:

2001

Language:

english

File:

PDF, 482 KB

english, 2001

37

Novel region of interest in chromosome 11 and other putative regions identified in a genome-wide scan in finnish hereditary prostate cancer families

Mika Matikainen, Johanna Schleutker, Elizabeth Gillanders, Agnes Baffoe-Bonnie, Mary Pat Jones, Tommi Kainu, Carol Markey, Pasi Koivisto, Teuvo Tammela, Joan Bailey-Wilson, Jeffrey Trent, Olli-P. Kall

Journal:

European Urology Supplements

Year:

2002

Language:

english

File:

PDF, 200 KB

english, 2002

38

Expression of Bcl-2 Family Member Bid in Normal and Malignant Tissues

Krajewska, Maryla, Zapata, Juan M., Meinhold-Heerlein, Ivo, Hedayat, Hirad, Monks, Anne, Bettendorf, Herta, Shabaik, Ahmed, Bubendorf, Lukas, Kallioniemi, Olli-P., Kim, Hoguen, Reifenberger, Guido, Re

Journal:

Year:

2002

Language:

english

File:

PDF, 549 KB

english, 2002

39

BRCA2 Mutations in 154 Finnish Male Breast Cancer Patients

Syrjäkoski, Kirsi, Kuukasjärvi, Tuula, Waltering, Kati, Haraldsson, Karin, Auvinen, Anssi, Borg, Åke, Kainu, Tommi, Kallioniemi, Olli-P, Koivisto, Pasi A.

Journal:

Year:

2004

Language:

english

File:

PDF, 114 KB

english, 2004

40

High-Resolution Analysis of Gene Copy Number Alterations in Human Prostate Cancer Using CGH on cDNA Microarrays: Impact of Copy Number on Gene Expression

Wolf, Maija, Mousses, Spyro, Hautaniemi, Sampsa, Karhu, Ritva, Huusko, Pia, Allinen, Minna, Elkahloun, Abdel, Monni, Outi, Chen, Yidong, Kallioniemi, Anne, Kallioniemi, Olli-P

Journal:

Year:

2004

Language:

english

File:

PDF, 554 KB

english, 2004

41

Relatives of Prostate Cancer Patients Have an Increased Risk of Prostate and Stomach Cancers: A Population-Based, Cancer Registry Study in Finland

Mika P. Matikainen, Eero Pukkala, Johanna Schleutker, Teuvo L. J. Tammela, Pasi Koivisto, Risto Sankila and Olli-P. Kallioniemi

Journal:

Cancer Causes & Control

Year:

2001

Language:

english

File:

PDF, 1.76 MB

english, 2001

42

Biochip technologies in cancer research

Kallioniemi, Olli-P

Journal:

Annals of Medicine

Year:

2001

Language:

english

File:

PDF, 725 KB

english, 2001

43

Androgen receptor gene amplification: A novel molecular mechanism for endocrine therapy resistance in human prostate cancer

Koivisto, Pasi, Visakorpi, Tapio, Kallioniemi, Olli-P.

Journal:

Scandinavian Journal of Clinical & Laboratory Investigation

Year:

1996

Language:

english

File:

PDF, 563 KB

english, 1996

44

Distance-Based Reconstruction of Tree Models for Oncogenesis

Desper, Richard, Jiang, Feng, Kallioniemi, Olli-P., Moch, Holger, Papadimitriou, Christos H., Schäffer, Alejandro A.

Journal:

Journal of Computational Biology

Year:

2000

Language:

english

File:

PDF, 226 KB

english, 2000

45

[Advances in Cancer Research] Volume 68 || Genetic Basis and Clonal Evolution of Human Prostate Cancer

Kallioniemi, Olli-P.

Year:

1996

Language:

english

File:

PDF, 1.78 MB

english, 1996

46

Tissue Microarrays: What Will They Bring to Molecular and Anatomic Pathology?

Moch, Holger, Kononen, Juha, Kallioniemi, Olli-P., Sauter, Guido

Journal:

Advances in Anatomic Pathology

Year:

2001

Language:

english

File:

PDF, 12.05 MB

english, 2001

47

ERBB2 Amplification in Breast Cancer Analyzed by Fluorescence in situ Hybridization

Olli-P. Kallioniemi, Anne Kallioniemi, Wayne Kurisu, Ann Thor, Ling-Chun Chen, Helene S. Smith, Frederic M. Waldman, Dan Pinkel and Joe W. Gray

Journal:

Proceedings of the National Academy of Sciences

Year:

1992

Language:

english

File:

PDF, 1.09 MB

english, 1992