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1

Causal biological network database: a comprehensive platform of causal biological network models focused on the pulmonary and vascular systems

Boue, S., Talikka, M., Westra, J. W., Hayes, W., Di Fabio, A., Park, J., Schlage, W. K., Sewer, A., Fields, B., Ansari, S., Martin, F., Veljkovic, E., Kenney, R., Peitsch, M. C., Hoeng, J.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.28 MB

english, 2015

2

Challenges for Coring Deep Permafrost on Earth and Mars

Pfiffner, S.M., Onstott, T.C., Ruskeeniemi, T., Talikka, M., Bakermans, C., McGown, D., Chan, E., Johnson, A., Phelps, T.J., Puil, M. Le, Difurio, S.A., Pratt, L.M., Stotler, R., Frape, S., Telling, J

Journal:

Year:

2008

Language:

english

File:

PDF, 11.05 MB

english, 2008

3

Geochronology and structural relationships of mesothermal gold mineralization in the Palaeoproterozoic Jokisivu prospect, southern Finland

SAALMANN, K., MÄNTTÄRI, I., PELTONEN, P., WHITEHOUSE, M. J., GRÖNHOLM, P., TALIKKA, M.

Journal:

Geological Magazine

Year:

2010

Language:

english

File:

PDF, 2.59 MB

english, 2010

4

A vascular biology network model focused on inflammatory processes to investigate atherogenesis and plaque instability

De León, Héctor, Boué, Stéphanie, Schlage, Walter K, Boukharov, Natalia, Westra, Jurjen W, Gebel, Stephan, VanHooser, Aaron, Talikka, Marja, Fields, R, Veljkovic, Emilija, Peck, Michael J, Mathis, Car

Journal:

Journal of Translational Medicine

Year:

2014

Language:

english

File:

PDF, 3.05 MB

english, 2014

5

Vascular endothelial growth factor C is required for sprouting of the first lymphatic vessels from embryonic veins

Karkkainen, Marika J, Haiko, Paula, Sainio, Kirsi, Partanen, Juha, Taipale, Jussi, Petrova, Tatiana V, Jeltsch, Michael, Jackson, David G, Talikka, Marja, Rauvala, Heikki

Journal:

Nature Immunology

Year:

2003

Language:

english

File:

PDF, 3.01 MB

english, 2003

6

Characterization of Xenopus Phox2a and Phox2b defines expression domains within the embryonic nervous system and early heart field

Marja Talikka, Giovanni Stefani, Ali H Brivanlou, Kathryn Zimmerman

Journal:

Gene Expression Patterns

Year:

2004

Language:

english

File:

PDF, 465 KB

english, 2004

7

Distinct Patterns of Downstream Target Activation Are Specified by the Helix–Loop–Helix Domain of Proneural Basic Helix–Loop–Helix Transcription Factors

Marja Talikka, Sharon E. Perez, Kathryn Zimmerman

Journal:

Developmental Biology

Year:

2002

Language:

english

File:

PDF, 371 KB

english, 2002

8

Case study: the role of mechanistic network models in systems toxicology

Hoeng, Julia, Talikka, Marja, Martin, Florian, Sewer, Alain, Yang, Xiang, Iskandar, Anita, Schlage, Walter K., Peitsch, Manuel C.

Journal:

Drug Discovery Today

Year:

2014

Language:

english

File:

PDF, 3.50 MB

english, 2014

9

Quantitative assessment of biological impact using transcriptomic data and mechanistic network models

Thomson, Ty M., Sewer, Alain, Martin, Florian, Belcastro, Vincenzo, Frushour, Brian P., Gebel, Stephan, Park, Jennifer, Schlage, Walter K., Talikka, Marja, Vasilyev, Dmitry M., Westra, Jurjen W., Hoen

Journal:

Toxicology and Applied Pharmacology

Year:

2013

Language:

english

File:

PDF, 879 KB

english, 2013

10

In vitro systems toxicology approach to investigate the effects of repeated cigarette smoke exposure on human buccal and gingival organotypic epithelial tissue cultures

Schlage, Walter K., Iskandar, Anita R., Kostadinova, Radina, Xiang, Yang, Sewer, Alain, Majeed, Shoaib, Kuehn, Diana, Frentzel, Stefan, Talikka, Marja, Geertz, Marcel, Mathis, Carole, Ivanov, Nikolai,

Journal:

Toxicology Mechanisms and Methods

Year:

2014

Language:

english

File:

PDF, 2.69 MB

english, 2014

11

Quantification of biological network perturbations for mechanistic insight and diagnostics using two-layer causal models

Florian Martin,Alain Sewer,Marja Talikka,Yang Xiang,Julia Hoeng…

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 2.27 MB

english, 2014

12

The Response of Human Nasal and Bronchial Organotypic Tissue Cultures to Repeated Whole Cigarette Smoke Exposure

Talikka, M., Kostadinova, R., Xiang, Y., Mathis, C., Sewer, A., Majeed, S., Kuehn, D., Frentzel, S., Merg, C., Geertz, M., Martin, F., Ivanov, N. V., Peitsch, M. C., Hoeng, J.

Journal:

International Journal of Toxicology

Year:

2014

Language:

english

File:

PDF, 1.50 MB

english, 2014

13

Genomic impact of cigarette smoke, with application to three smoking-related diseases

Talikka, M., Sierro, N., Ivanov, N. V., Chaudhary, N., Peck, M. J., Hoeng, J., Coggins, C. R. E., Peitsch, M. C.

Journal:

Critical Reviews in Toxicology

Year:

2012

Language:

english

File:

PDF, 767 KB

english, 2012

14

[IEEE 2013 International Conference on Interactive Collaborative Learning (ICL) - Kazan, Russia (2013.09.25-2013.09.27)] 2013 International Conference on Interactive Collaborative Learning (ICL) - Enhancing the undergraduate engineering students' research skills

Talikka, Marja, Eskelinen, Harri

Year:

2013

Language:

english

File:

PDF, 755 KB

english, 2013

15

Societal pressure, the homosexual and the role of psychiatry

Ross, Michael W., Talikka, Annikki

Journal:

Nordic Journal of Psychiatry

Year:

1978

Language:

english

File:

PDF, 211 KB

english, 1978

16

Special Issue Prepared by Tampere Peace Research Institute || Economic and Power Frustrations as Predictors of Industrial and Political Conflict Strategies

Annikki Talikka

Journal:

Journal of Peace Research

Year:

1970

Language:

english

File:

PDF, 3.17 MB

english, 1970

17

sbv IMPROVER Diagnostic Signature Challenge

Rhrissorrakrai, Kahn, Rice, J Jeremy, Boue, Stephanie, Talikka, Marja, Bilal, Erhan, Martin, Florian, Meyer, Pablo, Norel, Raquel, Xiang, Yang, Stolovitzky, Gustavo, Hoeng, Julia, Peitsch, Manuel C

Journal:

Systems Biomedicine

Year:

2013

Language:

english

File:

PDF, 1.15 MB

english, 2013

18

Human Sex Hormone-binding Globulin Promoter Activity Is Influenced by a (TAAAA) n Repeat Element within an Alu Sequence

Hogeveen, K. N., Talikka, M., Hammond, G. L.

Journal:

Journal of Biological Chemistry

Year:

2001

Language:

english

File:

PDF, 863 KB

english, 2001

19

Classification of lung adenocarcinoma and squamous cell carcinoma samples based on their gene expression profile in the sbv IMPROVER Diagnostic Signature Challenge

Ben-Hamo, Rotem, Boue, Stephanie, Martin, Florian, Talikka, Marja, Efroni, Sol

Journal:

Systems Biomedicine

Year:

2013

Language:

english

File:

PDF, 1.82 MB

english, 2013

20

Economic and Power Frustrations as Predictors of Industrial an d pOlitical Con Flict Strategies

Journal:

Journal of Peace Research

Year:

1970

Language:

english

File:

PDF, 1.55 MB

english, 1970

21

A Modular Cell-Type Focused Inflammatory Process Network Model for Non-Diseased Pulmonary Tissue

Talikka, Marja, Westra, Jurjen, Schlage, Walter, Hengstermann, Arnd, Gebel, Stephan, Mathis, Carole, Thomson, Ty, Wong, Ben, Hoang, Vy, Veljkovic, Emilija, Peck, Michael, Lichtner, Rosemarie, Weisense

Journal:

Bioinformatics and Biology Insights

Year:

2013

Language:

english

File:

PDF, 1.75 MB

english, 2013

22

On Crowd-verification of Biological Networks

Hoeng, Julia, Ansari, Sam, Kleiman, Robin, Binder, Jean, Hayes, William, Iskandar, Anita, Rhrissorrakrai, Kahn, Norel, Raquel, O'Neel, Bruce, Peitsch, Manuel, Poussin, Carine, Talikka, Marja, Schlage,

Journal:

Bioinformatics and Biology Insights

Year:

2013

Language:

english

File:

PDF, 4.99 MB

english, 2013

23

Construction of a Computable Network Model for DNA Damage, Autophagy, Cell Death, and Senescence

Talikka,, Gebel, Stephan, Lichtner, Rosemarie, Frushour, Brian, Schlage, Walter, Hoang, Vy, Talikka,, Hengstermann, Arnd, Mathis, Carole, Veljkovic, Emilija, Peck, Michael, Peitsch, Manuel, Deehan,

Journal:

Bioinformatics and Biology Insights

Year:

2013

Language:

english

File:

PDF, 6.31 MB

english, 2013

24

Systems toxicology approaches enable mechanistic comparison of spontaneous and cigarette smoke-related lung tumor development in the A/J mouse model

Luettich, Karsta, Xiang, Yang, Iskandar, Anita, Sewer, Alain, Martin, Florian, Talikka, Marja, Vanscheeuwijck, Patrick, Berges, An, Veljkovic, Emilija, Gonzalez-Suarez, Ignacio, Schlage, Walter, Schla

Journal:

Interdisciplinary Toxicology

Year:

2014

Language:

english

File:

PDF, 1.63 MB

english, 2014

25

Systems Approaches Evaluating the Perturbation of Xenobiotic Metabolism in Response to Cigarette Smoke Exposure in Nasal and Bronchial Tissues

Iskandar, Anita R., Martin, Florian, Talikka, Marja, Schlage, Walter K., Kostadinova, Radina, Mathis, Carole, Hoeng, Julia, Peitsch, Manuel C.

Journal:

BioMed Research International

Year:

2013

Language:

english

File:

PDF, 5.75 MB

english, 2013

26

Impact Assessment of Cigarette Smoke Exposure on Organotypic Bronchial Epithelial Tissue Cultures: A Comparison of Mono-Culture and Coculture Model Containing Fibroblasts

Iskandar, Anita R., Xiang, Yang, Frentzel, Stefan, Talikka, Marja, Leroy, Patrice, Kuehn, Diana, Guedj, Emmanuel, Martin, Florian, Mathis, Carole, Ivanov, Nikolai V., Peitsch, Manuel C., Hoeng, Julia

Journal:

Toxicological Sciences

Year:

2015

Language:

english

File:

PDF, 1.52 MB

english, 2015

27

[IEEE 2015 IEEE Frontiers in Education Conference (FIE) - Camino Real El Paso, El Paso, TX, USA (2015.10.21-2015.10.24)] 2015 IEEE Frontiers in Education Conference (FIE) - Challenges in finding a connection between IL education and research problem formulation

Marja, Talikka, Hanna, Varri, Harri, Eskelinen, Heli, Rimppi

Year:

2015

Language:

english

File:

PDF, 3.09 MB

english, 2015

28

Effects of Cigarette Smoke, Cessation, and Switching to Two Heat-Not-Burn Tobacco Products on Lung Lipid Metabolism in C57BL/6 and Apoe −/− Mice—An Integrative Systems Toxicology Analysis

Titz, Bjoern, Boué, Stéphanie, Phillips, Blaine, Talikka, Marja, Vihervaara, Terhi, Schneider, Thomas, Nury, Catherine, Elamin, Ashraf, Guedj, Emmanuel, Peck, Michael J., Schlage, Walter K., Cabanski,

Journal:

Toxicological Sciences

Year:

2016

Language:

english

File:

PDF, 1.67 MB

english, 2016

29

Relevance from industrial information service

Journal:

Librarian Career Development

Year:

1998

Language:

english

File:

PDF, 46 KB

english, 1998

30

Identification of gene expression signature for cigarette smoke exposure response--from man to mouse

Martin, F., Talikka, M., Hoeng, J., Peitsch, M.

Journal:

Human & Experimental Toxicology

Year:

2015

Language:

english

File:

PDF, 440 KB

english, 2015

31

Long term exposure to cigarette smoke impacts genes involved in cardiac muscle structure and function in Apoe−/− mouse while exposure to the aerosol does not

Szostak, J., Boué, S., Talikka, M., Guedj, E., Martin, F., Phillips, B., Ivanov, N., Peitsch, M., Hoeng, J.

Journal:

Toxicology Letters

Year:

2016

Language:

english

File:

PDF, 70 KB

english, 2016

32

Evaluation of the tobacco heating system 2.2. Part 9: Application of systems pharmacology to identify exposure response markers in peripheral blood of smokers switching to THS2.2

Martin, Florian, Talikka, Marja, Ivanov, Nikolai V., Haziza, Christelle, Hoeng, Julia, Peitsch, Manuel C.

Journal:

Regulatory Toxicology and Pharmacology

Year:

2016

Language:

english

File:

PDF, 3.63 MB

english, 2016

33

Evaluation of the Tobacco Heating System 2.2 (THS2.2). Part 5: microRNA expression from a 90-day rat inhalation study indicates that exposure to THS2.2 aerosol causes reduced effects on lung tissue compared with cigarette smoke

Sewer, Alain, Kogel, Ulrike, Talikka, Marja, Wong, Ee Tsin, Martin, Florian, Xiang, Yang, Guedj, Emmanuel, Ivanov, Nikolai V., Hoeng, Julia, Peitsch, Manuel C.

Journal:

Regulatory Toxicology and Pharmacology

Year:

2016

Language:

english

File:

PDF, 2.20 MB

english, 2016

34

Aerosol from Tobacco Heating System 2.2 has reduced impact on mouse heart gene expression compared with cigarette smoke

Szostak, Justyna, Boué, Stéphanie, Talikka, Marja, Guedj, Emmanuel, Martin, Florian, Phillips, Blaine, Ivanov, Nikolai V., Peitsch, Manuel C., Hoeng, Julia

Journal:

Food and Chemical Toxicology

Year:

2017

Language:

english

File:

PDF, 2.86 MB

english, 2017

35

Development of an Adverse Outcome Pathway for the Onset of Hypertension by Oxidative Stress-Mediated Perturbation of Endothelial Nitric Oxide Bioavailability

Lowe, Frazer J., Luettich, Karsta, Talikka, Marja, Hoang, Vy, Haswell, Linsey E., Hoeng, Julia, Gaca, Marianna D.

Journal:

Applied In Vitro Toxicology

Year:

2017

Language:

english

File:

PDF, 419 KB

english, 2017

36

[AIP 2007 PHYSICS EDUCATION RESEARCH CONFERENCE - Greensboro (NC) (1–2 August 2007)] AIP Conference Proceedings - FCI-based Multiple Choice Test for Investigating Students' Representational Coherence

Savinainen, Antti, Nieminen, Pasi, Viiri, Jouni, Korkea-aho, Jukka, Talikka, Aku, Hsu, Leon, Henderson, Charles, McCullough, Laura

Year:

2007

Language:

english

File:

PDF, 340 KB

english, 2007

37

Novel approaches to develop community-built biological network models for potential drug discovery

Talikka, Marja, Bukharov, Natalia, Hayes, William S., Hofmann-Apitius, Martin, Alexopoulos, Leonidas, Peitsch, Manuel C., Hoeng, Julia

Journal:

Expert Opinion on Drug Discovery

Year:

2017

Language:

english

File:

PDF, 1.45 MB

english, 2017

38

Effects of brief integrated information literacy education sessions on undergraduate engineering students' interdisciplinary research

Talikka, Marja, Soukka, Risto, Eskelinen, Harri

Journal:

New Review of Academic Librarianship

Year:

2017

Language:

english

File:

PDF, 739 KB

english, 2017

39

P010 Effects of cigarette smoke on the DSS-induced colitis model in C57Bl/6 mice

Phillips, B., Lo Sasso, G., Talikka, M., Veljkovic, E., Martin, F., Elamin, A., Guedj, E., Ivanov, N., Peitsch, M., Hoeng, J.

Journal:

Journal of Crohn's and Colitis

Year:

2017

Language:

english

File:

PDF, 108 KB

english, 2017

40

Mechanistic Evaluation of the Impact of Smoking and Chronic Obstructive Pulmonary Disease on the Nasal Epithelium

Talikka, Marja, Martin, Florian, Sewer, Alain, Vuillaume, Grégory, Leroy, Patrice, Luettich, Karsta, Chaudhary, Nveed, Peck, Michael J, Peitsch, Manuel C, Hoeng, Julia

Journal:

Clinical Medicine Insights Circulatory Respiratory and Pulmonary Medicine

Year:

2017

Language:

english

File:

PDF, 4.89 MB

english, 2017

41

The Adverse Outcome Pathway for Oxidative Stress-Mediated EGFR Activation Leading to Decreased Lung Function

Luettich, Karsta, Talikka, Marja, Lowe, Frazer J., Haswell, Linsey E., Park, Jennifer, Gaca, Marianna D., Hoeng, Julia

Journal:

Applied In Vitro Toxicology

Year:

2017

Language:

english

File:

PDF, 333 KB

english, 2017

42

Systems toxicology approach for the assessment of zebrafish cardiotoxicity

Li, R., vom Berg, C., Talikka, M., Madan, S., Dörpinghaus, J., Fluck, J., Szostak, J.G., Martin, F., Peitsch, M.C., Hoeng, J., Zupanic, A.

Journal:

Toxicology Letters

Year:

2018

Language:

english

File:

PDF, 54 KB

english, 2018

43

Systems toxicological assessment of two candidate modified risk tobacco products on cardiovascular and respiratory effects in apoe deficient MICE - A 6 month inhalation study

Lebrun, S., Phillips, B., Szostak, J., Guedj, E., Wong, E., Talikka, M., Tietz, B., Martin, F., Vuillaume, G., Leroy, P., Buettner, A., Ivanov, N., Vanscheeuwijck, P., Peitsch, M., Hoeng, J.

Journal:

Atherosclerosis

Year:

2018

Language:

english

File:

PDF, 225 KB

english, 2018

44

Construction of a Suite of Computable Biological Network Models Focused on Mucociliary Clearance in the Respiratory Tract

Yepiskoposyan, Hasmik, Talikka, Marja, Vavassori, Stefano, Martin, Florian, Sewer, Alain, Gubian, Sylvain, Luettich, Karsta, Peitsch, Manuel Claude, Hoeng, Julia

Journal:

Frontiers in Genetics

Year:

2019

File:

PDF, 1.88 MB

2019

45

Construction of a Suite of Computable Biological Network Models Focused on Mucociliary Clearance in the Respiratory Tract

Yepiskoposyan, Hasmik, Talikka, Marja, Vavassori, Stefano, Martin, Florian, Sewer, Alain, Gubian, Sylvain, Luettich, Karsta, Peitsch, Manuel Claude, Hoeng, Julia

Journal:

Frontiers in Genetics

Year:

2019

Language:

english

File:

PDF, 1.88 MB

english, 2019

46

Biological changes in C57BL/6 mice following 3 weeks of inhalation exposure to cigarette smoke or e-vapor aerosols

Lee, K. Monica, Hoeng, Julia, Harbo, Sam, Kogel, Ulrike, Gardner, William, Oldham, Michael, Benson, Eric, Talikka, Marja, Kondylis, Athanasios, Martin, Florian, Titz, Bjoern, Ansari, Sam, Trivedi, Key

Journal:

Inhalation Toxicology

Year:

2018

Language:

english

File:

PDF, 1.90 MB

english, 2018

47

A Meta-Analysis of the Performance of a Blood-Based Exposure Response Gene Signature Across Clinical Studies on the Tobacco Heating System 2.2 (THS 2.2)

Martin, Florian, Talikka, Marja, Ivanov, Nikolai V., Haziza, Christelle, Hoeng, Julia, Peitsch, Manuel C.

Journal:

Frontiers in Pharmacology

Year:

2019

File:

PDF, 2.83 MB

2019

48

Systems toxicology meta-analysis – from aerosol exposure to nanotoxicology

Talikka, Marja, Belcastro, Vincenzo, Gubian, Sylvain, Martin, Florian, Peitsch, Manuel C., Hoeng, Julia

Journal:

Current Opinion in Toxicology

Year:

2019

Language:

english

File:

PDF, 6.21 MB

english, 2019

49

Epigenomics in tobacco risk assessment: Opportunities for integrated new approaches

Choukrallah, Mohamed-Amin, Sewer, Alain, Talikka, Marja, Sierro, Nicolas, Peitsch, Manuel C., Hoeng, Julia, Ivanov, Nikolai V.

Journal:

Current Opinion in Toxicology

Year:

2018

File:

PDF, 3.71 MB

2018

50

NPA: an R package for computing network perturbation amplitudes using gene expression data and two-layer networks

Martin, Florian, Gubian, Sylvain, Talikka, Marja, Hoeng, Julia, Peitsch, Manuel C.

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 1.89 MB

english, 2019