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51

Molecular characterization of phosphoglycerate mutase in archaea

John van der Oost, Martijn A. Huynen, Corné H. Verhees

Journal:

FEMS Microbiology Letters

Year:

2002

Language:

english

File:

PDF, 1.11 MB

english, 2002

52

Identification of a glycolytic regulon in the archaea Pyrococcus and Thermococcus

Harmen J.G. Van De Werken, Corné H. Verhees, Jasper Akerboom, Willem M. De Vos, John Van Der Oost

Journal:

FEMS Microbiology Letters

Year:

2006

Language:

english

File:

PDF, 215 KB

english, 2006

53

Pyrophosphate as a central energy carrier in the hydrogen-producing extremely thermophilic Caldicellulosiruptor saccharolyticus

Abraham A.M. Bielen, Karin Willquist, Jakob Engman, John Van Der Oost, Ed W.J. Van Niel, Servé W.M. Kengen

Journal:

FEMS Microbiology Letters

Year:

2010

Language:

english

File:

PDF, 197 KB

english, 2010

54

Growth phase-dependent gene regulation in vivo in Sulfolobus solfataricus

Melissa DeYoung, Michelle Thayer, John van der Oost, Kenneth M. Stedman

Journal:

FEMS Microbiology Letters

Year:

2011

Language:

english

File:

PDF, 337 KB

english, 2011

55

Characterization and mode of action of an exopolygalacturonase from the hyperthermophilic bacterium Thermotoga maritima

Leon D. Kluskens, Gert-Jan W.M. van Alebeek, Jasper Walther, Alphons G.J. Voragen, Willem M. de Vos, John van der Oost

Journal:

Year:

2005

Language:

english

File:

PDF, 226 KB

english, 2005

56

Conformational studies of a hyperthermostable enzyme

Sotirios Koutsopoulos, John van der Oost, Willem Norde

Journal:

Year:

2005

Language:

english

File:

PDF, 417 KB

english, 2005

57

Production and characterization of a thermostable L-threonine dehydrogenase from the hyperthermophilic archaeon Pyrococcus furiosus

Ronnie Machielsen, John van der Oost

Journal:

Year:

2006

Language:

english

File:

PDF, 272 KB

english, 2006

58

Characterization and structural modeling of a new type of thermostable esterase from Thermotoga maritima

Mark Levisson, John van der Oost, Servé W. M. Kengen

Journal:

Year:

2007

Language:

english

File:

PDF, 665 KB

english, 2007

59

Hyperthermophilic enzymes − stability, activity and implementation strategies for high temperature applications

Larry D. Unsworth, John van der Oost, Sotirios Koutsopoulos

Journal:

Year:

2007

Language:

english

File:

PDF, 517 KB

english, 2007

60

Tertiary structure in 7.9 m guanidinium chloride − the role of Glu53 and Asp287 in Pyrococcus furiosus endo-β-1,3-glucanase

Roberta Chiaraluce, Rita Florio, Sebastiana Angelaccio, Giulio Gianese, Johan F. T. van Lieshout, John van der Oost, Valerio Consalvi

Journal:

Year:

2007

Language:

english

File:

PDF, 1.44 MB

english, 2007

61

Kinetically controlled refolding of a heat-denatured hyperthermostable protein

Sotirios Koutsopoulos, John van der Oost, Willem Norde

Journal:

Year:

2007

Language:

english

File:

PDF, 429 KB

english, 2007

62

Crystal structure of a family 16 endoglucanase from the hyperthermophile Pyrococcus furiosus– structural basis of substrate recognition

Andrea Ilari, Annarita Fiorillo, Sebastiana Angelaccio, Rita Florio, Roberta Chiaraluce, John van der Oost, Valerio Consalvi

Journal:

Year:

2009

Language:

english

File:

PDF, 764 KB

english, 2009

63

10.1038/35077011

Brejc, Katjua, van Dijk, Willem J., Klaassen, Remco V., Schuurmans, Mascha, van der Oost, John, Smit, August B., Sixma, Titia K.

Journal:

Year:

2001

Language:

english

File:

PDF, 1.02 MB

english, 2001

64

Discovering novel biology by in silico archaeology

Ettema, Thijs J. G., de Vos, Willem M., van der Oost, John

Journal:

Nature Reviews Microbiology

Year:

2005

Language:

english

File:

PDF, 412 KB

english, 2005

65

Cofactor engineering of Lactobacillus brevis alcohol dehydrogenase by computational design

Ronnie Machielsen, Loren L. Looger, John Raedts, Sjoerd Dijkhuizen, Werner Hummel, Hans-Georg Hennemann, Thomas Daussmann, John van der Oost

Journal:

Engineering in Life Sciences

Year:

2009

Language:

english

File:

PDF, 185 KB

english, 2009

66

Effect of O2 concentrations on Sulfolobus solfataricus P2

Gwénola Simon, Jasper Walther, Nathalie Zabeti, Yannick Combet-Blanc, Richard Auria, John Van Der Oost, Laurence Casalot

Journal:

FEMS Microbiology Letters

Year:

2009

Language:

english

File:

PDF, 127 KB

english, 2009

67

Extremophiles

John van der Oost, Willem M. de Vos, Garo Antranikian

Journal:

Trends in Biotechnology

Year:

1996

Language:

english

File:

PDF, 374 KB

english, 1996

68

The crystal structure of a hyperthermoactive exopolygalacturonase from Thermotoga maritima reveals a unique tetramer

Tjaard Pijning, Gertie van Pouderoyen, Leon Kluskens, John van der Oost, Bauke W. Dijkstra

Journal:

Year:

2009

Language:

english

File:

PDF, 623 KB

english, 2009

69

CRISPR-based adaptive and heritable immunity in prokaryotes

John van der Oost, Matthijs M. Jore, Edze R. Westra, Magnus Lundgren, Stan J.J. Brouns

Journal:

Trends in Biochemical Sciences

Year:

2009

Language:

english

File:

PDF, 462 KB

english, 2009

70

Microbial production of bulk chemicals: development of anaerobic processes

Ruud A. Weusthuis, Ischa Lamot, John van der Oost, Johan P.M. Sanders

Journal:

Trends in Biotechnology

Year:

2011

Language:

english

File:

PDF, 175 KB

english, 2011

71

Modularity in the gain and loss of genes: applications for function prediction

Thijs Ettema, John van der Oost, Martijn Huynen

Journal:

Trends in Genetics

Year:

2001

Language:

english

File:

PDF, 38 KB

english, 2001

72

TRASH: a novel metal-binding domain predicted to be involved in heavy-metal sensing, trafficking and resistance

Thijs J.G. Ettema, Martijn A. Huynen, Willem M. de Vos, John van der Oost

Journal:

Trends in Biochemical Sciences

Year:

2003

Language:

english

File:

PDF, 240 KB

english, 2003

73

Glutamate dehydrogenase from hyperthermophilic Bacteria and Archaea: determinants of thermostability and catalysis at extremely high temperatures

Joyce H.G Lebbink, Servé W.M Kengen, John van der Oost, Willem M de Vos

Journal:

Journal of Molecular Catalysis B: Enzymatic

Year:

1999

Language:

english

File:

PDF, 1.64 MB

english, 1999

74

The Bacillus subtilis cytochrome-c oxidase : Variations on a conserved protein theme

Matti SARASTE, Tuula METSO, Tiina NAKARI, Tuulikki JALLI, Marko LAURAEUS, John VAN DER OOST

Journal:

Year:

1991

Language:

english

File:

PDF, 895 KB

english, 1991

75

The Oxidation of Methylamine in Paracoccus denitrificans

Jan-Willem L. De Gier, John Van Der Oost, Nellie Harms, Adriaan H. Stouthamer, Rob J. M. Van Spanning

Journal:

Year:

1995

Language:

english

File:

PDF, 704 KB

english, 1995

76

Mutational Analysis of the Nor Gene Cluster which Encodes Nitric-Oxide Reductase from Paracoccus denitrificans

Anthonius P. N. De Boer, John Van Der Oost, Willem N. M. Reijnders, Hans V. Westerhoff, Adriaan H. Stouthamer, Rob J. M. Van Spanning

Journal:

Year:

1996

Language:

english

File:

PDF, 1.71 MB

english, 1996

77

Characterization of Aptamer-Protein Complexes by X-ray Crystallography and Alternative Approaches

Ruigrok, Vincent J. B., Levisson, Mark, Hekelaar, Johan, Smidt, Hauke, Dijkstra, Bauke W., van der Oost, John

Journal:

International Journal of Molecular Sciences

Year:

2012

Language:

english

File:

PDF, 1.38 MB

english, 2012

78

Cascade-mediated binding and bending of negatively supercoiled DNA

Westra, Edze R., Nilges, Benedikt, van Erp, Paul B. G., van der Oost, John, Dame, Remus T., Brouns, Stan J. J.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.20 MB

english, 2012

79

Crystallization and Preliminary X-ray Analysis of the Periplasmic Fragment of CyoA-a Subunit of the Escherichia coli Cytochrome o Complex

John van der Oost, Andrea Musacchio, Richard A. Pauptit, Thomas A. Ceska, Rik K. Wierenga, Matti Saraste

Journal:

Journal of Molecular Biology

Year:

1993

File:

PDF, 203 KB

1993

80

Engineering activity and stability of Thermotoga maritima glutamate dehydrogenase. I. introduction of a six-residue ion-pair network in the hinge region

Joyce H.G Lebbink, Stefan Knapp, John van der Oost, David Rice, Rudolf Ladenstein, Willem M de Vos

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 892 KB

english, 1998

81

Engineering activity and stability of Thermotoga maritima glutamate dehydrogenase. II: construction of a 16-residue ion-pair network at the subunit interface

Joyce H.G Lebbink, Stefan Knapp, John van der Oost, David Rice, Rudolf Ladenstein, Willem M de Vos

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 996 KB

english, 1999

82

The CuAsite of the caa3-type oxidase of Bacillus subtilis is a mixed-valence binuclear copper centre

Claes von Wachenfeldt, Simon de Vries, John van der Oost

Journal:

Year:

1994

Language:

english

File:

PDF, 631 KB

english, 1994

83

Nitrite and nitric oxide reduction in Paracoccus denitrificans is under the control of NNR, a regulatory protein that belongs to the FNR family of transcriptional activators

Rob J.M Van Spanning, Anthonius P.N De Boer, Willem N.M Reijnders, Stephen Spiro, Hans V Westerhoff, Adriaan H Stouthamer, John Van der Oost

Journal:

Year:

1995

Language:

english

File:

PDF, 425 KB

english, 1995

84

Introduction of a CuA site into the blue copper protein amicyanin from Thiobacillus versutus

Christopher Dennison, Erik Vijgenboom, Simon de Vries, John van der Oost, Gerard W. Canters

Journal:

Year:

1995

Language:

english

File:

PDF, 311 KB

english, 1995

85

Reversed electron transfer through the bc1complex enables a cytochrome c oxidase mutant (Δaa3/cbb3) of Paracoccus denitrificans to grow on methylamine

John van der Oost, Mike Schepper, Adriaan H. Stouthamer, Hans V. Westerhoff, Rob J.M. van Spanning, Jan-Willem L. de Gier

Journal:

Year:

1995

Language:

english

File:

PDF, 476 KB

english, 1995

86

NMR characterization of a 264-residue hyperthermostable endo-β-1,3-glucanase

Johannes H. Ippel, Sotirios Koutsopoulos, Sanne M. Nabuurs, Willem J.H. van Berkel, John van der Oost, Carlo P.M. van Mierlo

Journal:

Biochemical and Biophysical Research Communications

Year:

2010

Language:

english

File:

PDF, 555 KB

english, 2010

87

RNAi: Prokaryotes Get in on the Act

John van der Oost, Stan J.J. Brouns

Journal:

Year:

2009

Language:

english

File:

PDF, 377 KB

english, 2009

88

Identification of modules in Aspergillus niger by gene co-expression network analysis

Robert A. van den Berg, Machtelt Braaksma, Douwe van der Veen, Mariët J. van der Werf, Peter J. Punt, John van der Oost, Leo H. de Graaff

Journal:

Fungal Genetics and Biology

Year:

2010

Language:

english

File:

PDF, 1.44 MB

english, 2010

89

Crystal Structure of Fervidolysin from Fervidobacterium pennivorans, a Keratinolytic Enzyme Related to Subtilisin

Jeong-Sun Kim, Leon D. Kluskens, Willem M. de Vos, Robert Huber, John van der Oost

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 1.85 MB

english, 2004

90

Substrate Specificity and Mechanism from the Structure of Pyrococcus furiosus Galactokinase

Andrew Hartley, Steven E. Glynn, Vladimir Barynin, Patrick J. Baker, Svetlana E. Sedelnikova, Corné Verhees, Daniel de Geus, John van der Oost, David J. Timson, Richard J. Reece, David W. Rice

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 3.44 MB

english, 2004

91

The Structures of Inhibitor Complexes of Pyrococcus furiosus Phosphoglucose Isomerase Provide Insights into Substrate Binding and Catalysis

John M. Berrisford, Jasper Akerboom, Stan Brouns, Svetlana E. Sedelnikova, Andrew P. Turnbull, John van der Oost, Laurent Salmon, Renaud Hardré, Iain A. Murray, G. Michael Blackburn, David W. Rice, Pa

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 433 KB

english, 2004

92

Evidence Supporting a cis-enediol-based Mechanism for Pyrococcus furiosus Phosphoglucose Isomerase

John M. Berrisford, Andrea M. Hounslow, Jasper Akerboom, Wilfred R. Hagen, Stan J.J. Brouns, John van der Oost, Iain A. Murray, G. Michael Blackburn, Jonathan P. Waltho, David W. Rice, Patrick J. Bake

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 780 KB

english, 2006

93

Crystal Structure and Biochemical Properties of the d-Arabinose Dehydrogenase from Sulfolobus solfataricus

Stan J.J. Brouns, Andrew P. Turnbull, Hanneke L.D.M. Willemen, Jasper Akerboom, John van der Oost

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.97 MB

english, 2007

94

Structural Insight into Substrate Binding and Catalysis of a Novel 2-Keto-3-deoxy-d-arabinonate Dehydratase Illustrates Common Mechanistic Features of the FAH Superfamily

Stan J.J. Brouns, Thomas R.M. Barends, Petra Worm, Jasper Akerboom, Andrew P. Turnbull, Laurent Salmon, John van der Oost

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 2.38 MB

english, 2008

95

Crystal Structure and Biochemical Properties of a Novel Thermostable Esterase Containing an Immunoglobulin-Like Domain

Mark Levisson, Lei Sun, Sjon Hendriks, Peter Swinkels, Twan Akveld, Jelle B. Bultema, Arjan Barendregt, Robert H.H. van den Heuvel, Bauke W. Dijkstra, John van der Oost, Servé W.M. Kengen

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 765 KB

english, 2009

96

Isoprenoid biosynthesis in Archaea – Biochemical and evolutionary implications

Rie Matsumi, Haruyuki Atomi, Arnold J.M. Driessen, John van der Oost

Journal:

Research in Microbiology

Year:

2011

Language:

english

File:

PDF, 444 KB

english, 2011

97

Molecular characterization of phosphoglycerate mutase in archaea

John van der Oost, Martijn A. Huynen, Corné H. Verhees

Journal:

FEMS Microbiology Letters

Year:

2002

Language:

english

File:

PDF, 1.12 MB

english, 2002

98

Making More of Milk Sugar by Engineering Lactic Acid Bacteria

Willem M. de Vos, Pascal Hols, Richard van Kranenburg, Evert Luesink, Oscar P. Kuipers, John van der Oost, Michiel Kleerebezem, Jeroen Hugenholtz

Journal:

International Dairy Journal

Year:

1998

Language:

english

File:

PDF, 209 KB

english, 1998

99

CRISPR-Cas Systems || Type III CRISPR-Cas Systems and the Roles of CRISPR-Cas in Bacterial Virulence

Barrangou, Rodolphe, van der Oost, John

Year:

2013

Language:

english

File:

PDF, 1.81 MB

english, 2013

100

CRISPR-Cas Systems || CRISPR-Cas Systems to Probe Ecological Diversity and Host–Viral Interactions

Barrangou, Rodolphe, van der Oost, John

Year:

2013

Language:

english

File:

PDF, 2.12 MB

english, 2013