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1

DNA counterion current and saturation examined by a MEMS-based solid state nanopore sensor

Hung Chang, Bala Murali Venkatesan, Samir M. Iqbal, G. Andreadakis, F. Kosari, G. Vasmatzis, Dimitrios Peroulis, Rashid Bashir

Journal:

Biomedical Microdevices

Year:

2006

Language:

english

File:

PDF, 492 KB

english, 2006

2

Determination of atomic desolvation energies from the structures of crystallized proteins

Chao Zhang, George Vasmatzis, James L Cornette, Charles DeLisi

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 385 KB

english, 1997

3

The Role of Desmoglein-3 in the Diagnosis of Squamous Cell Carcinoma of the Lung

Cemile Dilara Savci-Heijink, Farhad Kosari, Marie-Christine Aubry, Bolette L. Caron, Zhifu Sun, Ping Yang, George Vasmatzis

Journal:

The American Journal of Pathology

Year:

2009

Language:

english

File:

PDF, 503 KB

english, 2009

4

Magnetophoretic-based microfluidic device for DNA Concentration

Shim, Sangjo, Shim, Jiwook, Taylor, William R., Kosari, Farhad, Vasmatzis, George, Ahlquist, David A., Bashir, Rashid

Journal:

Biomedical Microdevices

Year:

2016

Language:

english

File:

PDF, 1.55 MB

english, 2016

5

Chromoplectic TPM3–ALK rearrangement in a patient with inflammatory myofibroblastic tumor who responded to ceritinib after progression on crizotinib

Mansfield, A. S., Murphy, S. J., Harris, F. R., Robinson, S. I., Marks, R. S., Johnson, S. H., Smadbeck, J. B., Halling, G. C., Yi, E. S., Wigle, D., Vasmatzis, G., Jen, J.

Journal:

Annals of Oncology

Year:

2016

Language:

english

File:

PDF, 1.28 MB

english, 2016

6

Molecular characterization of colorectal adenomas with and without malignancy reveals distinguishing genome, transcriptome and methylome alterations

Druliner, Brooke R., Wang, Panwen, Bae, Taejeong, Baheti, Saurabh, Slettedahl, Seth, Mahoney, Douglas, Vasmatzis, Nikolaos, Xu, Hang, Kim, Minsoo, Bockol, Matthew, O’Brien, Daniel, Grill, Diane, Warne

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 3.59 MB

english, 2018

7

Chromosomal rearrangements and their neoantigenic potential in mesothelioma

Mansfield, Aaron Scott, Peikert, Tobias, Vasmatzis, George

Journal:

Translational Lung Cancer Research

Year:

2020

File:

PDF, 1.39 MB

2020

8

Crystal structure of the disulfide-stabilized Fv fragment of anticancer antibody B1: Conformational influence of an engineered disulfide bond

Orna Almog, Itai Benhar, George Vasmatzis, Maria Tordova, Byungkook Lee, Ira Pastan, Gary L. Gilliland

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1998

Language:

english

File:

PDF, 1.09 MB

english, 1998

9

Exhaustive conformational search and simulated annealing for models of lattice peptides

R. C. Brower, George Vasmatzis, Michael Silverman, Charles Delisi

Journal:

Year:

1993

Language:

english

File:

PDF, 547 KB

english, 1993

10

Predicting immunoglobulin-like hypervariable loops

George Vasmatzis, Richard Brower, Charles Delisi

Journal:

Year:

1994

Language:

english

File:

PDF, 905 KB

english, 1994

11

High expression levels of survivin protein independently predict a poor outcome for patients who undergo surgery for clear cell renal cell carcinoma

Alexander S. Parker, Farhad Kosari, Christine M. Lohse, R. Houston Thompson, Eugene D. Kwon, Linda Murphy, Darren L. Riehle, Michael L. Blute, Bradley C. Leibovich, George Vasmatzis, John C. Cheville

Journal:

Year:

2006

Language:

english

File:

PDF, 229 KB

english, 2006

12

Prostate cancer cells use genetic and epigenetic mechanisms for progression to androgen independence

Horacio Murillo, Lucy J. Schmidt, Melissa Karter, Kari A. Hafner, Yasushi Kondo, Karla V. Ballman, George Vasmatzis, Robert B. Jenkins, Donald J. Tindall

Journal:

Genes, Chromosomes and Cancer

Year:

2006

Language:

english

File:

PDF, 799 KB

english, 2006

13

Stabilization of protein structures

Byungkook Lee, George Vasmatzis

Journal:

Current Opinion in Biotechnology

Year:

1997

Language:

english

File:

PDF, 825 KB

english, 1997

14

Optimization of laser capture microdissection and RNA amplification for gene expression profiling of prostate cancer

Dagmar M Kube, Cemile D Savci-Heijink, Anne-Françoise Lamblin, Farhad Kosari, George Vasmatzis, John C Cheville, Donald P Connelly, George G Klee

Journal:

BMC Molecular Biology

Year:

2007

Language:

english

File:

PDF, 625 KB

english, 2007

15

Impact of sample acquisition and linear amplification on gene expression profiling of lung adenocarcinoma: laser capture micro-dissection cell-sampling versus bulk tissue-sampling

Eric W Klee, Sibel Erdogan, Lori Tillmans, Farhad Kosari, Zhifu Sun, Dennis A Wigle, Ping Yang, Marie C Aubry, George Vasmatzis

Journal:

BMC Medical Genomics

Year:

2009

Language:

english

File:

PDF, 810 KB

english, 2009

16

10.1038/87595

Geanacopoulos, Mark, Vasmatzis, George, Zhurkin, Victor B., Adhya, Sankar

Journal:

Natural Structural Biology

Year:

2001

Language:

english

File:

PDF, 1.37 MB

english, 2001

17

Novel markers for enterochromaffin cells and gastrointestinal neuroendocrine carcinomas

Leja, Justyna, Essaghir, Ahmed, Essand, Magnus, Wester, Kenneth, öberg, Kjell, Tötterman, Thomas H, Lloyd, Ricardo, Vasmatzis, George, Demoulin, Jean-Baptiste, Giandomenico, Valeria

Journal:

Modern Pathology

Year:

2008

Language:

english

File:

PDF, 373 KB

english, 2008

18

Global gene expression profiling in normal endometrium and endometrial cancer in the same patient using laser capture microdissection can be used for data reduction

B. Winterhoff, G. Vasmatzis, J. Felipe Lima, J. Munz, S. Zarei, A. Meuter, S. Murphy, B. Gostout

Journal:

Gynecologic Oncology

Year:

2012

Language:

english

File:

PDF, 134 KB

english, 2012

19

Identification of Three New Alternate Human Kallikrein 2 Transcripts: Evidence of Long Transcript and Alternative Splicing

Xiu Fen Liu, Magnus Essand, George Vasmatzis, Byungkook Lee, Ira Pastan

Journal:

Biochemical and Biophysical Research Communications

Year:

1999

Language:

english

File:

PDF, 281 KB

english, 1999

20

TcR Recognition of the MHC-Peptide Dimer: Structural Properties of a Ternary Complex

George Vasmatzis, James Cornette, Ugur Sezerman, Charles DeLisi

Journal:

Journal of Molecular Biology

Year:

1996

Language:

english

File:

PDF, 1.58 MB

english, 1996

21

Stabilization of a recombinant Fv fragment bybase-loop interconnection and VH-VL permutation

Ulrich Brinkmann, Angelina Di Carlo, George Vasmatzis, Natalya Kurochkina, Richard Beers, Byungkook Lee, Ira Pastan

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 410 KB

english, 1997

22

Improved stability and yield of a Fv-toxin fusion protein by computer design and protein engineering of the Fv

Partha S Chowdhury, George Vasmatzis, Richard Beers, Byungkook Lee, Ira Pastan

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 532 KB

english, 1998

23

Shared Gene Expression Alterations in Prostate Cancer and Histologically Benign Prostate from Patients with Prostate Cancer

Farhad Kosari, John C. Cheville, Cristiane M. Ida, R. Jeffrey Karnes, Alexey A. Leontovich, Thomas J. Sebo, Sibel Erdogan, Erika Rodriguez, Stephen J. Murphy, George Vasmatzis

Journal:

The American Journal of Pathology

Year:

2012

Language:

english

File:

PDF, 983 KB

english, 2012

24

DIXDC1 isoform, l-DIXDC1, is a novel filamentous actin-binding protein

Xianshu Wang, Li Zheng, Zhaozhu Zeng, Guangjin Zhou, Jeremy Chien, Chiping Qian, George Vasmatzis, Viji Shridhar, Lin Chen, Wanguo Liu

Journal:

Biochemical and Biophysical Research Communications

Year:

2006

Language:

english

File:

PDF, 567 KB

english, 2006

25

Anaplastic lymphoma kinase immunoreactivity correlates with ALK gene rearrangement and transcriptional up-regulation in non–small cell lung carcinomas

Jennifer M. Boland, Sibel Erdogan, George Vasmatzis, Ping Yang, Lori S. Tillmans, Michele R. Erickson Johnson, Xiaoke Wang, Lisa M. Peterson, Kevin C. Halling, Andre M. Oliveira, Marie Christine Aubry

Journal:

Human Pathology

Year:

2009

Language:

english

File:

PDF, 435 KB

english, 2009

26

POD-04.07: A gene expression profile predictive of outcome in men at high-risk of systemic progression and death from prostate cancer following radical prostatectomy

R.J. Karnes, J. Cheville, G. Vasmatzis

Journal:

Year:

2007

Language:

english

File:

PDF, 59 KB

english, 2007

27

Computational determination of side chain specificity for pockets in class I MHC molecules

George Vasmatzis, Chao Zhang, James L. Cornette, Charles DeLisi

Journal:

Molecular Immunology

Year:

1996

Language:

english

File:

PDF, 1.15 MB

english, 1996

28

ERGL, a novel gene related to ERGIC-53 that is highly expressed in normal and neoplastic prostate and several other tissues

Noga Yerushalmi, Andrea Keppler-Hafkemeyer, George Vasmatzis, Xiu Fen Liu, Pär Olsson, Tapan K. Bera, Paul Duray, Byungkook Lee, Ira Pastan

Journal:

Year:

2001

Language:

english

File:

PDF, 1.05 MB

english, 2001

29

Study design considerations in clinical outcome research of lung cancer using microarray analysis

Yang, P., Sun, Z., Aubry, M.C., Kosari, F., Bamlet, W., Endo, C., Molina, J.R., Vasmatzis, G.

Journal:

Year:

2004

Language:

english

File:

PDF, 391 KB

english, 2004

30

Can gene expression profiling predict survival for patients with squamous cell carcinoma of the lung?

Zhifu Sun, Ping Yang, Marie-Christine Aubry, Farhad Kosari, Chiaki Endo, Julian Molina, George Vasmatzis

Journal:

Molecular Cancer

Year:

2004

Language:

english

File:

PDF, 650 KB

english, 2004

31

Detection and Quantification of Methylation in DNA using Solid-State Nanopores

Shim, Jiwook, Humphreys, Gwendolyn I., Venkatesan, Bala Murali, Munz, Jan Marie, Zou, Xueqing, Sathe, Chaitanya, Schulten, Klaus, Kosari, Farhad, Nardulli, Ann M., Vasmatzis, George, Bashir, Rashid

Journal:

Scientific Reports

Year:

2013

Language:

english

File:

PDF, 919 KB

english, 2013

32

Novel TRAF1-ALK fusion identified by deep RNA sequencing of anaplastic large cell lymphoma

Feldman, Andrew L., Vasmatzis, George, Asmann, Yan W., Davila, Jaime, Middha, Sumit, Eckloff, Bruce W., Johnson, Sarah H., Porcher, Julie C., Ansell, Stephen M., Caride, Ariel

Journal:

Genes, Chromosomes and Cancer

Year:

2013

Language:

english

File:

PDF, 332 KB

english, 2013

33

DNA-Mediated Fluctuations in Ionic Current through Silicon Oxide Nanopore Channels

Chang, H., Kosari, F., Andreadakis, G., Alam, M. A., Vasmatzis, G., Bashir, R.

Journal:

Year:

2004

Language:

english

File:

PDF, 142 KB

english, 2004

34

A simple method for gene phasing using mate pair sequencing

Cradic, Kendall W, Murphy, Stephen J, Drucker, Travis M, Sikkink, Robert A, Eberhardt, Norman L, Neuhauser, Claudia, Vasmatzis, George, Grebe, Stefan KG

Journal:

BMC Medical Genetics

Year:

2014

Language:

english

File:

PDF, 558 KB

english, 2014

35

Mo1355 Prognostic Multigene Mutation Profile of EUS FNA Cytology Specimens by Next- Generation Sequencing in Locally Advanced Rectal Cancer

Gleeson, Ferga C., Kipp, Benjamin R., Voss, Jesse S., Campion, Michael B., Henry, Michael, Sciallis, Andrew P., Graham, Rondell, Lazaridis, Konstantinos, Vasmatzis, George, Levy, Michael J.

Journal:

Gastrointestinal Endoscopy

Year:

2014

Language:

english

File:

PDF, 78 KB

english, 2014

36

Mo1465 EUS FNA Cytology Mutation Profiling Using Next-Generation Sequencing: Personalized Care for Treatment NaïVE Locally Advanced Rectal Cancer

Gleeson, Ferga C., Kipp, Benjamin R., Voss, Jesse S., Campion, Michael B., Henry, Michael, Sciallis, Andrew P., Graham, Rondell, Lazaridis, Konstantinos, Vasmatzis, George, Levy, Michael J.

Journal:

Gastrointestinal Endoscopy

Year:

2014

Language:

english

File:

PDF, 74 KB

english, 2014

37

Classification of journals in the QUALIS System of CAPES: the urgent need for changing the criteria

Gleeson, Ferga C., Kipp, Benjamin R., Voss, Jesse S., Campion, Michael B., Henry, Michael, Sciallis, Andrew P., Graham, Rondell, Lazaridis, Konstantinos, Vasmatzis, George, Levy, Michael J.

Journal:

The Brazilian Journal of Infectious Diseases

Year:

2010

Language:

english

File:

PDF, 661 KB

english, 2010

38

Sa1911 EUS FNA Cytology Next-Generation Sequencing: the FBXW7 Gene Pathogenic Alteration Profile in Treatment Naive Locally Advanced Rectal Cancer

Gleeson, Ferga C., Kipp, Benjamin R., Voss, Jesse S., Campion, Michael B., Henry, Michael, Sciallis, Andrew P., Graham, Rondell, Lazaridis, Konstantinos, Vasmatzis, George, Levy, Michael J.

Journal:

Gastroenterology

Year:

2014

Language:

english

File:

PDF, 418 KB

english, 2014

39

Mo1934 Treatment Naive Locally Advanced Rectal Cancer Lymph Node KRAS Mutation Profile As Revealed by EUS FNA Cytology Next-Generation Sequencing: An Additional Piece to the Puzzle

Gleeson, Ferga C., Kipp, Benjamin R., Voss, Jesse S., Campion, Michael B., Henry, Michael, Sciallis, Andrew P., Graham, Rondell, Lazaridis, Konstantinos, Vasmatzis, George, Levy, Michael J.

Journal:

Gastroenterology

Year:

2014

Language:

english

File:

PDF, 148 KB

english, 2014

40

978 PTEN DELETION AND MUTATION IN CLINICALLY INSIGNIFICANT AND SIGNIFICANT PROSTATE CANCER: AN ANALYSIS BY MATE-PAIR NEXT GENERATION AND SANGER SEQUENCING

Karnes, R. Jeffrey, cheville, john, vasmatzis, george, sukov, william

Journal:

The Journal of Urology

Year:

2013

Language:

english

File:

PDF, 50 KB

english, 2013

41

Fibroblast growth factor receptor 2 translocations in intrahepatic cholangiocarcinoma

Graham, Rondell P., Barr Fritcher, Emily G., Pestova, Ekaterina, Schulz, John, Sitailo, Leonid A., Vasmatzis, George, Murphy, Stephen J., McWilliams, Robert R., Hart, Steven N., Halling, Kevin C., Rob

Journal:

Human Pathology

Year:

2014

Language:

english

File:

PDF, 3.36 MB

english, 2014

42

Mate pair sequencing of oropharyngeal squamous cell carcinomas reveals that HPV integration occurs much less frequently than in cervical cancer

Gao, Ge, Johnson, Sarah H., Kasperbauer, Jan L., Eckloff, Bruce W., Tombers, Nicole M., Vasmatzis, George, Smith, David I.

Journal:

Journal of Clinical Virology

Year:

2014

Language:

english

File:

PDF, 1.44 MB

english, 2014

43

Genomic Rearrangements Define Lineage Relationships between Adjacent Lepidic and Invasive Components in Lung Adenocarcinoma

Murphy, S. J., Wigle, D. A., Lima, J. F., Harris, F. R., Johnson, S. H., Halling, G., Asiedu, M. K., Seto, C. T., Terra, S., Kosari, F., Peikert, T., Yang, P., Aubry, M.-C., Vasmatzis, G.

Journal:

Cancer Research

Year:

2014

Language:

english

File:

PDF, 1.69 MB

english, 2014

44

Discovery of Three Genes Specifically Expressed in Human Prostate by Expressed Sequence Tag Database Analysis

George Vasmatzis, Magnus Essand, Ulrich Brinkmann, Byungkook Lee and Ira Pastan

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 1.33 MB

english, 1998

45

PAGE-1, an X Chromosome-Linked GAGE-Like Gene that is Expressed in Normal and Neoplastic Prostate, Testis, and Uterus

Ulrich Brinkmann, George Vasmatzis, Byungkook Lee, Noga Yerushalmi, Magnus Essand and Ira Pastan

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 1.45 MB

english, 1998

46

High Expression of a Specific T-Cell Receptor γ Transcript in Epithelial Cells of the Prostate

Magnus Essand, George Vasmatzis, Ulrich Brinkmann, Paul Duray, Byungkook Lee and Ira Pastan

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.40 MB

english, 1999

47

BIMA V3: an aligner customized for mate pair library sequencing

Drucker, T. M., Johnson, S. H., Murphy, S. J., Cradic, K. W., Therneau, T. M., Vasmatzis, G.

Journal:

Year:

2014

Language:

english

File:

PDF, 99 KB

english, 2014

48

P51. Identification of prostate cancer-associated antigens by oxygen manipulation

Ma, T, Elkhattouti, A, Kosari, F, Karnes, RJ, Cheville, JC, Vasmatzis, G, Vuk-Pavlovic, S, Gomez, RC

Journal:

Journal for ImmunoTherapy of Cancer

Year:

2014

Language:

english

File:

PDF, 68 KB

english, 2014

49

ASCL1 and RET expression defines a clinically relevant subgroup of lung adenocarcinoma characterized by neuroendocrine differentiation

Kosari, F, Ida, C M, Aubry, M-C, Yang, L, Kovtun, I V, Klein, J L S, Li, Y, Erdogan, S, Tomaszek, S C, Murphy, S J, Bolette, L C, Kolbert, C P, Yang, P, Wigle, D A, Vasmatzis, G

Journal:

Year:

2014

Language:

english

File:

PDF, 2.75 MB

english, 2014

50

Identification of submicroscopic genetic changes and precise breakpoint mapping in myelofibrosis using high resolution mate-pair sequencing

Lasho, Terra, Johnson, Sarah H., Smith, David I., Crispino, John D., Pardanani, Animesh, Vasmatzis, George, Tefferi, Ayalew

Journal:

American Journal of Hematology

Year:

2013

Language:

english

File:

PDF, 325 KB

english, 2013

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