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51

Systems-level modeling of mycobacterial metabolism for the identification of new (multi-)drug targets

Rienksma, Rienk A., Suarez-Diez, Maria, Spina, Lucie, Schaap, Peter J., Martins dos Santos, Vitor A.P.

Journal:

Seminars in Immunology

Year:

2014

Language:

english

File:

PDF, 1.18 MB

english, 2014

52

Aspergillus niger Secretes Citrate to Increase Iron Bioavailability

Odoni, Dorett I., van Gaal, Merlijn P., Schonewille, Tom, Tamayo-Ramos, Juan A., Martins dos Santos, Vitor A. P., Suarez-Diez, Maria, Schaap, Peter J.

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 1.81 MB

english, 2017

53

Sensitivity of the macrophytes Pistia stratiotes and Eichhornia crassipes to hexazinone and dissipation of this pesticide in aquatic ecosystems

Ribeiro, Victor Hugo Vidal, Alencar, Brenda Thais Barbalho, dos Santos, Naiane Maria Correa, da Costa, Vitor Antunes Martins, dos Santos, José Barbosa, Francino, Dayana Maria Teodoro, Souza, Matheus d

Journal:

Ecotoxicology and Environmental Safety

Year:

2019

Language:

english

File:

PDF, 885 KB

english, 2019

54

Integrated univariate, multivariate and correlation-based network analyses reveal metabolite-specific effects on bacterial growth and biofilm formation in necrotizing soft tissue infections

AFZAL, MUHAMMAD, Saccenti, Edoardo, Madsen, Martin, Hansen, Marco Bo, Hyldegaard, Ole, Skrede, Steinar, martins dos santos, vitor, Norrby Teglund, Anna, Svensson, Mattias

Journal:

Journal of Proteome Research

Year:

2019

Language:

english

File:

PDF, 1.88 MB

english, 2019

55

Understanding the antimicrobial mechanism of TiO2-based nanocomposite films in a pathogenic bacterium

Kubacka, Anna, Diez, María Suárez, Rojo, David, Bargiela, Rafael, Ciordia, Sergio, Zapico, Inés, Albar, Juan P., Barbas, Coral, Martins dos Santos, Vitor A. P., Fernández-García, Marcos, Ferrer, Manue

Journal:

Scientific Reports

Year:

2014

Language:

english

File:

PDF, 876 KB

english, 2014

56

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource

van Dam, Jesse CJ, Koehorst, Jasper J, Schaap, Peter J, Martins dos Santos, Vitor AP, Suarez-Diez, Maria

Journal:

Journal of Biomedical Semantics

Year:

2015

Language:

english

File:

PDF, 2.69 MB

english, 2015

57

Efficient Reconstruction of Predictive Consensus Metabolic Network Models

van Heck, Ruben G. A., Ganter, Mathias, Martins dos Santos, Vitor A. P., Stelling, Joerg, Reed, Jennifer L.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 1.97 MB

english, 2016

58

Ex vivo transcriptional profiling reveals a common set of genes important for the adaptation of Pseudomonas aeruginosa to chronically infected host sites

Bielecki, Piotr, Komor, Uliana, Bielecka, Agata, Müsken, Mathias, Puchałka, Jacek, Pletz, Mathias W., Ballmann, Manfred, Martins dos Santos, Vítor AP, Weiss, Siegfried, Häussler, Susanne

Journal:

Environmental Microbiology

Year:

2013

Language:

english

File:

PDF, 1.43 MB

english, 2013

59

Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View

Saccenti, Edoardo, Nieuwenhuijse, David, Koehorst, Jasper J., Martins dos Santos, Vitor A. P., Schaap, Peter J., Zhou, Dongsheng

Journal:

Year:

2015

Language:

english

File:

PDF, 1.55 MB

english, 2015

60

The diurnal transcriptional landscape of the microalga Tetradesmus obliquus

Carreres, Benoit M., León-Saiki, G. Mitsue, Schaap, Peter J., Remmers, Ilse M., van der Veen, Douwe, Martins dos Santos, Vitor A.P., Wijffels, René H., Martens, Dirk E., Suarez-Diez, Maria

Journal:

Year:

2019

Language:

english

File:

PDF, 3.09 MB

english, 2019

61

Pseudomonas putida KT 2440 is HV 1 certified, not GRAS

Kampers, Linde F. C., Volkers, Rita J. M., Martins dos Santos, Vitor A. P.

Journal:

Microbial Biotechnology

Year:

2019

Language:

english

File:

PDF, 137 KB

english, 2019

62

Combined Transcriptome Sequencing of Mycoplasma hyopneumoniae and Infected Pig Lung Tissue Reveals Up-Regulation of Bacterial F1-Like ATPase and Down-Regulation of the P102 Cilium Adhesin in vivo

Kamminga, Tjerko, Benis, Nirupama, Martins dos Santos, Vitor, Bijlsma, Jetta J. E., Schaap, Peter J.

Journal:

Frontiers in Microbiology

Year:

2020

File:

PDF, 1.97 MB

2020

63

Resistance exercise leading to failure versus not to failure: effects on cardiovascular control

De Souza, Jéssica, Tibana, Ramires, Cavaglieri, Claudia, Vieira, Denis César, De Sousa, Nuno Manuel, Mendes, Felipe Augusto Dos Santos, Tajra, Vitor, Martins, Wagner, De Farias, Darlan, Balsamo, Sando

Journal:

BMC Cardiovascular Disorders

Year:

2013

Language:

english

File:

PDF, 312 KB

english, 2013

64

Delineating the effect of host environmental signals on a fully virulent strain of Bacillus anthracis using an integrated transcriptomics and proteomics approach

Panda, Gurudutta, Basak, Trayambak, Tanwer, Pooja, Sengupta, Shantanu, dos Santos, Vítor A.P. Martins, Bhatnagar, Rakesh

Journal:

Journal of Proteomics

Year:

2014

Language:

english

File:

PDF, 2.37 MB

english, 2014

65

Gut microbiota disturbance during antibiotic therapy

Ferrer, Manuel, Martins dos Santos, Vitor AP, Ott, Stephan J, Moya, Andrés

Journal:

Year:

2014

Language:

english

File:

PDF, 941 KB

english, 2014

66

Regulation of Three Virulence Strategies of Mycobacterium tuberculosis: A Success Story

Zondervan, Niels, van Dam, Jesse, Schaap, Peter, Martins dos Santos, Vitor, Suarez-Diez, Maria

Journal:

International Journal of Molecular Sciences

Year:

2018

Language:

english

File:

PDF, 2.31 MB

english, 2018

67

24-Epibrassinolid in the biometry of acclimatization to salinity in two cultivars of Vigna unguiculata (L.) Walp.

Liliane, C. Machado, Jessica, T. da Silva Martins, Susana, S. Conceicao, Kerolem, P. Sousa Cardoso, Thays, C. Costa, Glauco, A. dos Santos Nogueira, Vitor, R. Nascimento, Antonio, Vinicius C. Barbosa,

Journal:

African Journal of Agricultural Research

Year:

2016

Language:

english

File:

PDF, 480 KB

english, 2016

68

Towards understandingPseudomonas aeruginosaburn wound infections by profiling gene expression

Piotr Bielecki, Justyna Glik, Marek Kawecki, Vítor A. P. Martins dos Santos

Journal:

Biotechnology Letters

Year:

2008

Language:

english

File:

PDF, 305 KB

english, 2008

69

Concentrações de Eugenol para anestesia profunda e toxidade aguda em juvenis de piavuçu (Leporinus macrocephalus)

Vidal, Luiz Vítor Oliveira, Furuya, Wilson Massamitu, Graciano, Thêmis Sakaguti, Schamber, Christiano Rodrigues, Santos, Lilian Dena dos, Soares, Claudemir Martins

Journal:

Acta Scientiarum Biological Sciences

Year:

2008

File:

PDF, 184 KB

2008

70

Risk-Based Bioengineering Strategies for Reliable Bacterial Vaccine Production

Kamminga, Tjerko, Slagman, Simen-Jan, Martins dos Santos, Vitor A.P., Bijlsma, Jetta J.E., Schaap, Peter J.

Journal:

Trends in Biotechnology

Year:

2019

Language:

english

File:

PDF, 2.08 MB

english, 2019

71

Aspergillus niger citrate exporter revealed by comparison of two alternative citrate producing conditions

Odoni, Dorett I, Vazquez-Vilar, Marta, van Gaal, Merlijn P, Schonewille, Tom, Martins dos Santos, Vitor AP, Tamayo-Ramos, Juan Antonio, Suarez-Diez, Maria, Schaap, Peter J

Journal:

FEMS Microbiology Letters

Year:

2019

Language:

english

File:

PDF, 652 KB

english, 2019

72

Effects of winemaking on âMarselanâ red wines: volatile compounds and sensory aspects

Pozzatti, Marianna, Guerra, Celito C., Martins, Guilherme, dos Santos, Ingrid D., Wagner, Roger, FerrÃ£o, Marco F., Manfroi, Vitor

Journal:

Ciência e Técnica Vitivinícola

Year:

2020

File:

PDF, 698 KB

2020

73

pH-stat fed-batch process to enhance the production of cis, cis-muconate from benzoate by Pseudomonas putida KT2440-JD1

Jozef B. J. H. van Duuren, Dorien Wijte, Bianka Karge, Vítor A.P. Martins dos Santos, Yu Yang, Astrid E. Mars, Gerrit Eggink

Journal:

Biotechnology Progress

Year:

2012

Language:

english

File:

PDF, 1013 KB

english, 2012

74

Improving the prediction of Pseudomonas putida mt-2 growth kinetics with the use of a gene expression regulation model of the TOL plasmid

Michalis Koutinas, Alexandros Kiparissides, Ming-Chi Lam, Rafael Silva-Rocha, Miguel Godinho, Victor de Lorenzo, Vitor A.P. Martins dos Santos, Efstratios N. Pistikopoulos, Athanasios Mantalaris

Journal:

Biochemical Engineering Journal

Year:

2011

Language:

english

File:

PDF, 704 KB

english, 2011

75

Identification and functional characterization of novel xylose transporters from the cell factories Aspergillus niger and Trichoderma reesei

Sloothaak, Jasper, Tamayo-Ramos, Juan Antonio, Odoni, Dorett I., Laothanachareon, Thanaporn, Derntl, Christian, Mach-Aigner, Astrid R., Martins dos Santos, Vitor A. P., Schaap, Peter J.

Journal:

Biotechnology for Biofuels

Year:

2016

Language:

english

File:

PDF, 2.36 MB

english, 2016

76

Evaluation of diurnal responses of Tetradesmus obliquus under nitrogen limitation

LeÃ³n-Saiki, G. Mitsue, Carreres, Benoit M., Remmers, Ilse M., Wijffels, RenÃ© H., Martins dos Santos, Vitor A.P., van der Veen, Douwe, Schaap, Peter J., Suarez-Diez, Maria, Martens, Dirk E.

Journal:

Year:

2020

File:

PDF, 3.95 MB

2020

77

Protoanemonin: a natural quorum sensing inhibitor that selectively activates iron starvation response

Roberto A. Bobadilla Fazzini, Mette E. Skindersoe, Piotr Bielecki, Jacek Puchałka, Michael Givskov, Vitor A. P. Martins dos Santos

Journal:

Environmental Microbiology

Year:

2012

Language:

english

File:

PDF, 477 KB

english, 2012

78

Potential of proton-pumping rhodopsins: engineering photosystems into microorganisms

Claassens, Nico J., Volpers, Michael, Santos, Vitor A.P. Martins dos, van der Oost, John, de Vos, Willem M.

Journal:

Trends in Biotechnology

Year:

2013

Language:

english

File:

PDF, 874 KB

english, 2013

79

Network analysis of temporal functionalities of the gut induced by perturbations in new-born piglets

Benis, Nirupama, Schokker, Dirkjan, Suarez-Diez, Maria, Martins dos Santos, Vitor AP, Smidt, Hauke, Smits, Mari A

Journal:

Year:

2015

Language:

english

File:

PDF, 3.86 MB

english, 2015

80

Use of Microarray Datasets to generate Caco-2-dedicated Networks and to identify Reporter Genes of Specific Pathway Activity

Venkatasubramanian, Prashanna Balaji, Toydemir, Gamze, de Wit, Nicole, Saccenti, Edoardo, Martins dos Santos, Vitor A. P., van Baarlen, Peter, Wells, Jerry M., Suarez-Diez, Maria, Mes, Jurriaan J.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.23 MB

english, 2017

81

Exploring the metabolic network of the epidemic pathogenBurkholderia cenocepaciaJ2315 via genome-scale reconstruction

Kechi Fang, Hansheng Zhao, Changyue Sun, Carolyn M C Lam, Suhua Chang, Kunlin Zhang, Gurudutta Panda, Miguel Godinho, Vítor A P Martins dos Santos, Jing Wang

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 824 KB

english, 2011

82

Green genes: bioinformatics and systems-biology innovations drive algal biotechnology

Reijnders, Maarten J.M.F., van Heck, Ruben G.A., Lam, Carolyn M.C., Scaife, Mark A., Santos, Vitor A.P. Martins dos, Smith, Alison G., Schaap, Peter J.

Journal:

Trends in Biotechnology

Year:

2014

Language:

english

File:

PDF, 468 KB

english, 2014

83

Industrial Noise and Tooth Wear - Experimental Study

Cavacas, Maria Alzira, Tavares, Vitor, Borrecho, Gonçalo, Oliveira, Maria João, Oliveira, Pedro, Brito, José, Águas, Artur, dos Santos, José Martins

Journal:

International Journal of Medical Sciences

Year:

2015

Language:

english

File:

PDF, 538 KB

english, 2015

84

Cofactors revisited – Predicting the impact of flavoprotein-related diseases on a genome scale

Wegrzyn, Agnieszka B., Stolle, Sarah, Rienksma, Rienk A., Martins dos Santos, Vítor A.P., Bakker, Barbara M., Suarez-Diez, Maria

Journal:

Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease

Year:

2018

Language:

english

File:

PDF, 6.06 MB

english, 2018

85

Morphophysiological and Grain Yield Responses to Foliar and Soil Application of Boric Acid on Soybean

Rodrigues, Larissa Urzêdo, Nascimento, Vitor L., Peluzio, Joênes Mucci, Santos, Antônio Carlos Martins Dos, Silva, Rubens Ribeiro Da

Journal:

Communications in Soil Science and Plant Analysis

Year:

2019

File:

PDF, 1.19 MB

2019

86

Analysis of PM2.5 concentrations under pollutant emission control strategies in the metropolitan area of São Paulo, Brazil

de A. Albuquerque, Taciana T., West, Jason, de F. Andrade, Maria, Ynoue, Rita Y., Andreão, Willian L., dos Santos, Fábio S., Maciel, Felipe Marinho, Pedruzzi, Rizzieri, de O. Mateus, Vitor, Martins, J

Journal:

Environmental Science and Pollution Research

Year:

2019

File:

PDF, 3.07 MB

2019

87

The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms

Rafael Silva-Rocha, Javier Tamames, Vitor Martins dos Santos, Víctor de Lorenzo

Journal:

Environmental Microbiology

Year:

2011

Language:

english

File:

PDF, 1.01 MB

english, 2011

88

Induction of chronic non-inflammatory widespread pain increases cardiac sympathetic modulation in rats

Larissa Resende Oliveira, Vitor Ulisses de Melo, Fabricio Nunes Macedo, Andre Sales Barreto, Daniel Badaue-Passos Jr., Marcio Roberto Viana dos Santos, Daniel Penteado Martins Dias, Kathleen A. Sluka,

Journal:

Autonomic Neuroscience

Year:

2012

Language:

english

File:

PDF, 240 KB

english, 2012

89

Design and analysis of a tunable synchronized oscillator

Ryback, Brendan M, Odoni, Dorett I, van Heck, Ruben GA, van Nuland, Youri, Hesselman, Matthijn C, Martins dos Santos, Vítor AP, van Passel, Mark WJ, Hugenholtz, Floor

Journal:

Journal of Biological Engineering

Year:

2013

Language:

english

File:

PDF, 963 KB

english, 2013

90

Predicting the murine enterocyte metabolic response to diets that differ in lipid and carbohydrate composition

Sinha, Neeraj, Suarez-Diez, Maria, van Schothorst, Evert M., Keijer, Jaap, Martins dos Santos, Vitor A. P., Hooiveld, Guido J. E. J.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 3.40 MB

english, 2017

91

Linking genes to microbial growth kinetics—An integrated biochemical systems engineering approach

Michalis Koutinas, Alexandros Kiparissides, Rafael Silva-Rocha, Ming-Chi Lam, Vitor A.P. Martins dos Santos, Victor de Lorenzo, Efstratios N. Pistikopoulos, Athanasios Mantalaris

Journal:

Metabolic Engineering

Year:

2011

Language:

english

File:

PDF, 1.35 MB

english, 2011

92

(Re-)construction, characterization and modeling of systems for synthetic biology

María Suárez Diez, Carolyn M.C. Lam, Audrey Leprince, Vítor A. P. Martins dos Santos

Journal:

Biotechnology Journal

Year:

2009

Language:

english

File:

PDF, 311 KB

english, 2009

93

Redefining plant systems biology: from cell to ecosystem

Joost J.B. Keurentjes, Gerco C. Angenent, Marcel Dicke, Vítor A.P. Martins Dos Santos, Jaap Molenaar, Wim H. van der Putten, Peter C. de Ruiter, Paul C. Struik, Bart P.H.J. Thomma

Journal:

Trends in Plant Science

Year:

2011

Language:

english

File:

PDF, 453 KB

english, 2011

94

Systems biology at work

Vítor A.P. Martins dos Santos, Jiri Damborsky

Journal:

Current Opinion in Biotechnology

Year:

2010

Language:

english

File:

PDF, 106 KB

english, 2010

95

Integrated In Silico Analysis of Pathway Designs for Synthetic Photo-Electro-Autotrophy

Volpers, Michael, Claassens, Nico J., Noor, Elad, van der Oost, John, de Vos, Willem M., Kengen, Servé W. M., Martins dos Santos, Vitor A. P., Berg, Ivan A.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.95 MB

english, 2016

96

Biochemical response of Tachi-branco (Tachigali vulgaris L.G. Silva & H.C. Lima) in function of sources and doses of nitrogen

Simões, Pedro Henrique Oliveira, Cardoso, Kerolém Prícila Sousa, Nascimento, Vitor Resende do, Palheta, Juscelino Gonçalves, Paula, Manoel Tavares de, Santos, Nelivelton Gomes dos, Martins, Jéssica Ta

Journal:

Australian Journal of Crop Science

Year:

2017

Language:

english

File:

PDF, 989 KB

english, 2017

97

SyNDI: synchronous network data integration framework

Lindfors, Erno, van Dam, Jesse C. J., Lam, Carolyn Ming Chi, Zondervan, Niels A., Martins dos Santos, Vitor A. P., Suarez-Diez, Maria

Journal:

BMC Bioinformatics

Year:

2018

Language:

english

File:

PDF, 3.26 MB

english, 2018

98

Assessing the utility of airborne laser scanning derived indicators for tropical forest management

da Costa, Vitor Antunes Martins, de Oliveira, Adeliton da Fonseca, dos Santos, Jhonathan Gomes, Bovo, Alex Augusto Abreu, de Almeida, Danilo Roberti Alves, Gorgens, Eric Bastos

Journal:

Southern Forests a Journal of Forest Science

Year:

2020

File:

PDF, 1.23 MB

2020

99

Industrial biotechnology ofPseudomonas putidaand related species

Ignacio Poblete-Castro, Judith Becker, Katrin Dohnt, Vitor Martins dos Santos, Christoph Wittmann

Journal:

Applied Microbiology and Biotechnology

Year:

2012

Language:

english

File:

PDF, 459 KB

english, 2012

100

Systems biology of the gut: the interplay of food, microbiota and host at the mucosal interface

Vítor Martins dos Santos, Michael Müller, Willem M de Vos

Journal:

Current Opinion in Biotechnology

Year:

2010

Language:

english

File:

PDF, 330 KB

english, 2010

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