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1

Virophages, polintons, and transpovirons: a complex evolutionary network of diverse selfish genetic elements with different reproduction strategies

Natalya Yutin, Didier Raoult, Eugene V Koonin

Journal:

Virology Journal

Year:

2013

Language:

english

File:

PDF, 1.09 MB

english, 2013

2

A new family of hybrid virophages from an animal gut metagenome

Yutin, Natalya, Kapitonov, Vladimir V, Koonin, Eugene V

Journal:

Year:

2015

Language:

english

File:

PDF, 510 KB

english, 2015

3

Evolution of DNA ligases of Nucleo-Cytoplasmic Large DNA viruses of eukaryotes: a case of hidden complexity

Natalya Yutin, Eugene V Koonin

Journal:

Year:

2009

Language:

english

File:

PDF, 445 KB

english, 2009

4

Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut

Yutin, Natalya, Makarova, Kira S., Gussow, Ayal B., Krupovic, Mart, Segall, Anca, Edwards, Robert A., Koonin, Eugene V.

Journal:

Nature Microbiology

Year:

2017

Language:

english

File:

PDF, 1.15 MB

english, 2017

5

The origins of phagocytosis and eukaryogenesis

Natalya Yutin, Maxim Y Wolf, Yuri I Wolf, Eugene V Koonin

Journal:

Year:

2009

Language:

english

File:

PDF, 1.05 MB

english, 2009

6

A distinct abundant group of microbial rhodopsins discovered using functional metagenomics

Pushkarev, Alina, Inoue, Keiichi, Larom, Shirley, Flores-Uribe, José, Singh, Manish, Konno, Masae, Tomida, Sahoko, Ito, Shota, Nakamura, Ryoko, Tsunoda, Satoshi P., Philosof, Alon, Sharon, Itai, Yutin

Journal:

Year:

2018

Language:

english

File:

PDF, 16.88 MB

english, 2018

7

[IEEE 2020 12th International Conference on Measuring Technology and Mechatronics Automation (ICMTMA) - Phuket, Thailand (2020.2.28-2020.2.29)] 2020 12th International Conference on Measuring Technology and Mechatronics Automation (ICMTMA) - Energy-Saving Mechanism of Wireless Communication System Based on Particle Swarm Optimization

Ming, Cheng, Enliang, Wang, Yutin, Yu, Fan, Zhang

Year:

2020

File:

PDF, 731 KB

2020

8

Mimiviridae: clusters of orthologous genes, reconstruction of gene repertoire evolution and proposed expansion of the giant virus family

Natalya Yutin, Philippe Colson, Didier Raoult, Eugene V Koonin

Journal:

Virology Journal

Year:

2013

Language:

english

File:

PDF, 1.19 MB

english, 2013

9

Viruses with More Than 1,000 Genes: Mamavirus, a New Acanthamoeba polyphaga mimivirus Strain, and Reannotation of Mimivirus Genes

Colson, P., Yutin, N., Shabalina, S. A., Robert, C., Fournous, G., La Scola, B., Raoult, D., Koonin, E. V.

Journal:

Genome Biology and Evolution

Year:

2011

Language:

english

File:

PDF, 896 KB

english, 2011

10

Inactivation of BAD by IKK Inhibits TNFα-Induced Apoptosis Independently of NF-κB Activation

Yan, Jie, Xiang, Jialing, Lin, Yutin, Ma, Jingui, Zhang, Jiyan, Zhang, Hao, Sun, Jisheng, Danial, Nika N., Liu, Jing, Lin, Anning

Journal:

Year:

2013

Language:

english

File:

PDF, 1.58 MB

english, 2013

11

Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer

Yuri I Wolf, Kira S Makarova, Natalya Yutin, Eugene V Koonin

Journal:

Year:

2012

Language:

english

File:

PDF, 314 KB

english, 2012

12

A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia

Yutin, Natalya, Galperin, Michael Y.

Journal:

Environmental Microbiology

Year:

2013

Language:

english

File:

PDF, 248 KB

english, 2013

13

A New Family of DNA Viruses Causing Disease in Crustaceans from Diverse Aquatic Biomes

Subramaniam, Kuttichantran, Behringer, Donald C., Bojko, Jamie, Yutin, Natalya, Clark, Abigail S., Bateman, Kelly S., van Aerle, Ronny, Bass, David, Kerr, Rose C., Koonin, Eugene V., Stentiford, Grant

Journal:

Year:

2020

File:

PDF, 3.15 MB

2020

14

Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using the Global Ocean Sampling expedition metagenomes

Natalya Yutin, Marcelino T. Suzuki, Hanno Teeling, Marc Weber, J. Craig Venter, Douglas B. Rusch, Oded Béjà

Journal:

Environmental Microbiology

Year:

2007

Language:

english

File:

PDF, 398 KB

english, 2007

15

Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution

Natalya Yutin, Yuri I Wolf, Didier Raoult, Eugene V Koonin

Journal:

Virology Journal

Year:

2009

Language:

english

File:

PDF, 2.85 MB

english, 2009

16

Pandoraviruses are highly derived phycodnaviruses

Yutin, Natalya, Koonin, Eugene V

Journal:

Year:

2013

Language:

english

File:

PDF, 232 KB

english, 2013

17

Phylogenomics of prokaryotic ribosomal proteins

Natalya Yutin, Kira S Makarova, Yuri I Wolf, Eugene V Koonin

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

18

Brenner's Encyclopedia of Genetics || Horizontal Gene Transfer

Year:

2013

Language:

english

File:

PDF, 79 KB

english, 2013

19

The use of denaturing gradient gel electrophoresis with fully degenerate pufM primers to monitor aerobic anoxygenic phototrophic assemblages

Yutin, Natalya, Béjà, Oded, Suzuki, Marcelino T.

Journal:

Limnology and Oceanography Methods

Year:

2008

Language:

english

File:

PDF, 5.66 MB

english, 2008

20

Molecular subgroups and B7-H4 expression levels predict responses to dendritic cell vaccines in glioblastoma: an exploratory randomized phase II clinical trial

Yao, Yu, Luo, Feifei, Tang, Chao, Chen, Dikang, Qin, Zhiyong, Hua, Wei, Xu, Ming, Zhong, Ping, Yu, Shuangquan, Chen, Di, Ding, Xiaojie, Zhang, Yi, Zheng, Xiujuan, Yang, Jiao, Qian, Jiawen, Deng, Yutin

Journal:

Cancer Immunology, Immunotherapy

Year:

2018

Language:

english

File:

PDF, 3.62 MB

english, 2018

21

Multiple evolutionary origins of giant viruses

Koonin, Eugene V., Yutin, Natalya

Journal:

Year:

2018

File:

PDF, 3.95 MB

2018

22

Analysis of 100,000 human cancer genomes reveals the landscape of tumor mutational burden

Chalmers, Zachary R., Connelly, Caitlin F., Fabrizio, David, Gay, Laurie, Ali, Siraj M., Ennis, Riley, Schrock, Alexa, Campbell, Brittany, Shlien, Adam, Chmielecki, Juliann, Huang, Franklin, He, Yutin

Journal:

Genome Medicine

Year:

2017

Language:

english

File:

PDF, 1.52 MB

english, 2017

23

Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms

Boyer, M., Yutin, N., Pagnier, I., Barrassi, L., Fournous, G., Espinosa, L., Robert, C., Azza, S., Sun, S., Rossmann, M. G., Suzan-Monti, M., La Scola, B., Koonin, E. V., Raoult, D.

Journal:

Proceedings of the National Academy of Sciences

Year:

2009

Language:

english

File:

PDF, 4.01 MB

english, 2009

24

A novel group of diverse Polinton-like viruses discovered by metagenome analysis

Yutin, Natalya, Shevchenko, Sofiya, Kapitonov, Vladimir, Krupovic, Mart, Koonin, Eugene V.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.97 MB

english, 2015

25

Evolution of a major virion protein of the giant pandoraviruses from an inactivated bacterial glycoside hydrolase

Krupovic, Mart, Yutin, Natalya, Koonin, Eugene

Journal:

Virus Evolution

Year:

2020

File:

PDF, 1.08 MB

2020

26

Hidden evolutionary complexity of Nucleo-Cytoplasmic Large DNA viruses of eukaryotes

Natalya Yutin, Eugene V Koonin

Journal:

Virology Journal

Year:

2012

Language:

english

File:

PDF, 578 KB

english, 2012

27

Provirophages and transpovirons as the diverse mobilome of giant viruses

Desnues, C., La Scola, B., Yutin, N., Fournous, G., Robert, C., Azza, S., Jardot, P., Monteil, S., Campocasso, A., Koonin, E. V., Raoult, D.

Journal:

Proceedings of the National Academy of Sciences

Year:

2012

Language:

english

File:

PDF, 603 KB

english, 2012

28

Chordopoxvirus protein F12 implicated in enveloped virion morphogenesis is an inactivated DNA polymerase

Natalya Yutin,Guilhem Faure,Eugene V Koonin,Arcady R Mushegian

Journal:

Year:

2014

Language:

english

File:

PDF, 1.14 MB

english, 2014

29

Familial hypercholesterolemia with early coronary atherosclerotic heart disease: A case report

Luo, Yanhong, Zheng, Min, Zhang, Yutin, He, Shuang, Zhang, Lei, Sun, Huichao, Liu, Xiaoyan, Tan, Tao, Zhu, Hua, He, Jianfeng

Journal:

Experimental and Therapeutic Medicine

Year:

2019

Language:

english

File:

PDF, 1.24 MB

english, 2019

30

Origin of giant viruses from smaller DNA viruses not from a fourth domain of cellular life

Yutin, Natalya, Wolf, Yuri I., Koonin, Eugene V.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.51 MB

english, 2014

31

Multiple evolutionary origins of giant viruses

Koonin, Eugene V., Yutin, Natalya

Journal:

Year:

2018

Language:

english

File:

PDF, 3.95 MB

english, 2018

32

Cressdnaviricota: a virus phylum unifying 7 families of Rep-encoding viruses with single-stranded, circular DNA genomes

Krupovic, Mart, Varsani, Arvind, Kazlauskas, Darius, Breitbart, Mya, Delwart, Eric, Rosario, Karyna, Yutin, Natalya, Wolf, Yuri I., Harrach, BalÃ¡zs, Zerbini, F. Murilo, Dolja, Valerian V., Kuhn, Jens

Journal:

Journal of Virology

Year:

2020

File:

PDF, 965 KB

2020

33

Structure and function of virion RNA polymerase of a crAss-like phage

Drobysheva, Arina V., Panafidina, Sofia A., Kolesnik, Matvei V., Klimuk, Evgeny I., Minakhin, Leonid, Yakunina, Maria V., Borukhov, Sergei, Nilsson, Emelie, Holmfeldt, Karin, Yutin, Natalya, Makarova,

Journal:

Year:

2020

File:

PDF, 7.94 MB

2020

34

“Megavirales”, a proposed new order for eukaryotic nucleocytoplasmic large DNA viruses

Colson, Philippe, Lamballerie, Xavier, Yutin, Natalya, Asgari, Sassan, Bigot, Yves, Bideshi, Dennis K., Cheng, Xiao-Wen, Federici, Brian A., Etten, James L., Koonin, Eugene V., Scola, Bernard, Raoult,

Journal:

Archives of Virology

Year:

2013

Language:

english

File:

PDF, 190 KB

english, 2013

35

Novel Primers Reveal Wider Diversity among Marine Aerobic Anoxygenic Phototrophs

Yutin, N., Suzuki, M. T., Beja, O.

Journal:

Applied and Environmental Microbiology

Year:

2005

Language:

english

File:

PDF, 179 KB

english, 2005

36

Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis

Yutin, Natalya, Bäckström, Disa, Ettema, Thijs J. G., Krupovic, Mart, Koonin, Eugene V.

Journal:

Virology Journal

Year:

2018

Language:

english

File:

PDF, 4.98 MB

english, 2018

37

Abundance of type I toxin-antitoxin systems in bacteria: searches for new candidates and discovery of novel families

Fozo, E. M., Makarova, K. S., Shabalina, S. A., Yutin, N., Koonin, E. V., Storz, G.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 9.62 MB

english, 2010

38

The Dispersed Archaeal Eukaryome and the Complex Archaeal Ancestor of Eukaryotes

Koonin, E. V., Yutin, N.

Journal:

Cold Spring Harbor Perspectives in Biology

Year:

2014

Language:

english

File:

PDF, 918 KB

english, 2014

39

Proteorhodopsin genes in giant viruses

Natalya Yutin, Eugene V Koonin

Journal:

Year:

2012

Language:

english

File:

PDF, 2.45 MB

english, 2012

40

Babela massiliensis, a representative of a widespread bacterial phylum with unusual adaptations to parasitism in amoebae

Pagnier, Isabelle, Yutin, Natalya, Croce, Olivier, Makarova, Kira S, Wolf, Yuri I, Benamar, Samia, Raoult, Didier, Koonin, Eugene V, La Scola, Bernard

Journal:

Year:

2015

Language:

english

File:

PDF, 2.31 MB

english, 2015

41

Global Organization and Proposed Megataxonomy of the Virus World

Koonin, Eugene V., Dolja, Valerian V., Krupovic, Mart, Varsani, Arvind, Wolf, Yuri I., Yutin, Natalya, Zerbini, F. Murilo, Kuhn, Jens H.

Journal:

Microbiology and Molecular Biology Reviews

Year:

2020

File:

PDF, 8.88 MB

2020

42

Evolution of double-stranded DNA viruses of eukaryotes: from bacteriophages to transposons to giant viruses

Koonin, Eugene V., Krupovic, Mart, Yutin, Natalya

Journal:

Annals of the New York Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 468 KB

english, 2015

43

The Deep Archaeal Roots of Eukaryotes

Yutin, N., Makarova, K. S., Mekhedov, S. L., Wolf, Y. I., Koonin, E. V.

Journal:

Molecular Biology and Evolution

Year:

2008

Language:

english

File:

PDF, 658 KB

english, 2008

44

Novel Abundant Oceanic Viruses of Uncultured Marine Group II Euryarchaeota

Philosof, Alon, Yutin, Natalya, Flores-Uribe, José, Sharon, Itai, Koonin, Eugene V., Béjà, Oded

Journal:

Current Biology

Year:

2017

Language:

english

File:

PDF, 2.17 MB

english, 2017

45

Salmon Gill Poxvirus, the Deepest Representative of the Chordopoxvirinae

M. C. Gjessing, N. Yutin, T. Tengs, T. Senkevich, E. Koonin, H. P. Rønning, M. Alarcon, S. Ylving, K. Lie, B. Saure, L. Tran, B. Moss, O. B. Dale, G. Mcfadden

Year:

2015

Language:

english

File:

PDF, 4.00 MB

english, 2015

46

Putative novel photosynthetic reaction centre organizations in marine aerobic anoxygenic photosynthetic bacteria: insights from metagenomics and environmental genomics

Natalya Yutin, Oded Béjà

Journal:

Environmental Microbiology

Year:

2005

Language:

english

File:

PDF, 455 KB

english, 2005

47

Archaeal origin of tubulin

Natalya Yutin, Eugene V Koonin

Journal:

Year:

2012

Language:

english

File:

PDF, 360 KB

english, 2012

48

[IEEE 2019 18th IEEE International Conference On Machine Learning And Applications (ICMLA) - Boca Raton, FL, USA (2019.12.16-2019.12.19)] 2019 18th IEEE International Conference On Machine Learning And Applications (ICMLA) - Path Homologies of Deep Feedforward Networks

Chowdhury, Samir, Gebhart, Thomas, Huntsman, Steve, Yutin, Matvey

Year:

2019

File:

PDF, 2.38 MB

2019

49

Characterizing transcriptome changes in gill tissue of turbot (Scophthalmus maximus) for waterless preservation

Nie, Xiaobao, Zhang, Changfeng, Jiang, Changxing, Li, Songlin, Hong, Wanshu, Chen, Shixi, Zhang, Yutin

Journal:

Year:

2020

File:

PDF, 3.99 MB

2020

50

Phylogenomics of prokaryotic ribosomal proteins

Natalya Yutin, Kira S Makarova, Yuri I Wolf, Eugene V Koonin

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

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