Volume 7; Issue 2

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PLoS Genetics
Volume 7; Issue 2

PLoS Genetics

Volume 7; Issue 2

1

MiRNA Control of Vegetative Phase Change in Trees

Wang, Jia-Wei, Park, Mee Yeon, Wang, Ling-Jian, Koo, Yeonjong, Chen, Xiao-Ya, Weigel, Detlef, Poethig, R. Scott, Sederoff, Ronald R.

Journal:

Year:

2011

Language:

english

File:

PDF, 27.84 MB

english, 2011

2

The Evolution of Host Specialization in the Vertebrate Gut Symbiont Lactobacillus reuteri

Frese, Steven A., Benson, Andrew K., Tannock, Gerald W., Loach, Diane M., Kim, Jaehyoung, Zhang, Min, Oh, Phaik Lyn, Heng, Nicholas C. K., Patil, Prabhu B., Juge, Nathalie, MacKenzie, Donald A., Pears

Journal:

Year:

2011

Language:

english

File:

PDF, 775 KB

english, 2011

3

A Genome-Wide Study of DNA Methylation Patterns and Gene Expression Levels in Multiple Human and Chimpanzee Tissues

Pai, Athma A., Bell, Jordana T., Marioni, John C., Pritchard, Jonathan K., Gilad, Yoav, Gibson, Greg

Journal:

Year:

2011

Language:

english

File:

PDF, 1.08 MB

english, 2011

4

Genome-Wide Transcript Profiling of Endosperm without Paternal Contribution Identifies Parent-of-Origin–Dependent Regulation of AGAMOUS-LIKE36

Shirzadi, Reza, Andersen, Ellen D., Bjerkan, Katrine N., Gloeckle, Barbara M., Heese, Maren, Ungru, Alexander, Winge, Per, Koncz, Csaba, Aalen, Reidunn B., Schnittger, Arp, Grini, Paul E., Grelon, Mat

Journal:

Year:

2011

Language:

english

File:

PDF, 1.52 MB

english, 2011

5

Risk Alleles for Systemic Lupus Erythematosus in a Large Case-Control Collection and Associations with Clinical Subphenotypes

Taylor, Kimberly E., Chung, Sharon A., Graham, Robert R., Ortmann, Ward A., Lee, Annette T., Langefeld, Carl D., Jacob, Chaim O., Kamboh, M. Ilyas, Alarcón-Riquelme, Marta E., Tsao, Betty P., Moser, K

Journal:

Year:

2011

Language:

english

File:

PDF, 1.02 MB

english, 2011

6

Phosphoinositide Regulation of Integrin Trafficking Required for Muscle Attachment and Maintenance

Ribeiro, Inês, Yuan, Lin, Tanentzapf, Guy, Dowling, James J., Kiger, Amy, Rulifson, Eric

Journal:

Year:

2011

Language:

english

File:

PDF, 16.93 MB

english, 2011

7

Prevalence of Epistasis in the Evolution of Influenza A Surface Proteins

Kryazhimskiy, Sergey, Dushoff, Jonathan, Bazykin, Georgii A., Plotkin, Joshua B., Malik, Harmit S.

Journal:

Year:

2011

Language:

english

File:

PDF, 362 KB

english, 2011

8

A Population Genetic Approach to Mapping Neurological Disorder Genes Using Deep Resequencing

Myers, Rachel A., Casals, Ferran, Gauthier, Julie, Hamdan, Fadi F., Keebler, Jon, Boyko, Adam R., Bustamante, Carlos D., Piton, Amelie M., Spiegelman, Dan, Henrion, Edouard, Zilversmit, Martine, Hussi

Journal:

Year:

2011

Language:

english

File:

PDF, 379 KB

english, 2011

9

Meta-Analysis of Genome-Wide Association Studies in Celiac Disease and Rheumatoid Arthritis Identifies Fourteen Non-HLA Shared Loci

Zhernakova, Alexandra, Stahl, Eli A., Trynka, Gosia, Raychaudhuri, Soumya, Festen, Eleanora A., Franke, Lude, Westra, Harm-Jan, Fehrmann, Rudolf S. N., Kurreeman, Fina A. S., Thomson, Brian, Gupta, Na

Journal:

Year:

2011

Language:

english

File:

PDF, 478 KB

english, 2011

10

Association between Common Variation at the FTO Locus and Changes in Body Mass Index from Infancy to Late Childhood: The Complex Nature of Genetic Association through Growth and Development

Sovio, Ulla, Mook-Kanamori, Dennis O., Warrington, Nicole M., Lawrence, Robert, Briollais, Laurent, Palmer, Colin N. A., Cecil, Joanne, Sandling, Johanna K., Syvänen, Ann-Christine, Kaakinen, Marika,

Journal:

Year:

2011

Language:

english

File:

PDF, 663 KB

english, 2011

11

[SWI+], the Prion Formed by the Chromatin Remodeling Factor Swi1, Is Highly Sensitive to Alterations in Hsp70 Chaperone System Activity

Hines, Justin K., Li, Xiaomo, Du, Zhiqiang, Higurashi, Takashi, Li, Liming, Craig, Elizabeth A., Biggins, Sue

Journal:

Year:

2011

Language:

english

File:

PDF, 3.96 MB

english, 2011

12

Mapping a New Spontaneous Preterm Birth Susceptibility Gene, IGF1R, Using Linkage, Haplotype Sharing, and Association Analysis

Haataja, Ritva, Karjalainen, Minna K., Luukkonen, Aino, Teramo, Kari, Puttonen, Hilkka, Ojaniemi, Marja, Varilo, Teppo, Chaudhari, Bimal P., Plunkett, Jevon, Murray, Jeffrey C., McCarroll, Steven A.,

Journal:

Year:

2011

Language:

english

File:

PDF, 827 KB

english, 2011

13

Drosophila Lipophorin Receptors Mediate the Uptake of Neutral Lipids in Oocytes and Imaginal Disc Cells by an Endocytosis-Independent Mechanism

Parra-Peralbo, Esmeralda, Culi, Joaquim, Ashrafi, Kaveh

Journal:

Year:

2011

Language:

english

File:

PDF, 7.25 MB

english, 2011

14

Genome-Wide Association Study of Coronary Heart Disease and Its Risk Factors in 8,090 African Americans: The NHLBI CARe Project

Lettre, Guillaume, Palmer, Cameron D., Young, Taylor, Ejebe, Kenechi G., Allayee, Hooman, Benjamin, Emelia J., Bennett, Franklyn, Bowden, Donald W., Chakravarti, Aravinda, Dreisbach, Al, Farlow, Debor

Journal:

Year:

2011

Language:

english

File:

PDF, 468 KB

english, 2011

15

Epistatic Interaction Maps Relative to Multiple Metabolic Phenotypes

Snitkin, Evan S., Segrè, Daniel, Mackay, Trudy F. C.

Journal:

Year:

2011

Language:

english

File:

PDF, 2.11 MB

english, 2011

16

Targeted Sister Chromatid Cohesion by Sir2

Wu, Ching-Shyi, Chen, Yu-Fan, Gartenberg, Marc R., Lichten, Michael

Journal:

Year:

2011

Language:

english

File:

PDF, 1.32 MB

english, 2011

17

A New Testing Strategy to Identify Rare Variants with Either Risk or Protective Effect on Disease

Ionita-Laza, Iuliana, Buxbaum, Joseph D., Laird, Nan M., Lange, Christoph, Leal, Suzanne M.

Journal:

Year:

2011

Language:

english

File:

PDF, 153 KB

english, 2011

18

Two Frizzled Planar Cell Polarity Signals in the Drosophila Wing Are Differentially Organized by the Fat/Dachsous Pathway

Hogan, Justin, Valentine, Meagan, Cox, Chris, Doyle, Kristy, Collier, Simon, Rulifson, Eric

Journal:

Year:

2011

Language:

english

File:

PDF, 3.15 MB

english, 2011

19

Mutations in Zebrafish lrp2 Result in Adult-Onset Ocular Pathogenesis That Models Myopia and Other Risk Factors for Glaucoma

Veth, Kerry N., Willer, Jason R., Collery, Ross F., Gray, Matthew P., Willer, Gregory B., Wagner, Daniel S., Mullins, Mary C., Udvadia, Ava J., Smith, Richard S., John, Simon W. M., Gregg, Ronald G.,

Journal:

Year:

2011

Language:

english

File:

PDF, 1.74 MB

english, 2011

20

Break to Make a Connection

Saito, Takamune T., Colaiácovo, Monica P., Copenhaver, Gregory P.

Journal:

Year:

2011

Language:

english

File:

PDF, 306 KB

english, 2011

21

Nucleosomes Containing Methylated DNA Stabilize DNA Methyltransferases 3A/3B and Ensure Faithful Epigenetic Inheritance

Sharma, Shikhar, De Carvalho, Daniel D., Jeong, Shinwu, Jones, Peter A., Liang, Gangning, Reik, Wolf

Journal:

Year:

2011

Language:

english

File:

PDF, 2.79 MB

english, 2011

22

New Functions of Ctf18-RFC in Preserving Genome Stability outside Its Role in Sister Chromatid Cohesion

Gellon, Lionel, Razidlo, David F., Gleeson, Olive, Verra, Lauren, Schulz, Danae, Lahue, Robert S., Freudenreich, Catherine H., Hawley, R. Scott

Journal:

Year:

2011

Language:

english

File:

PDF, 1.55 MB

english, 2011

23

Pathogenic VCP/TER94 Alleles Are Dominant Actives and Contribute to Neurodegeneration by Altering Cellular ATP Level in a Drosophila IBMPFD Model

Chang, Ya-Chu, Hung, Wan-Tzu, Chang, Yun-Chin, Chang, Henry C., Wu, Chia-Lin, Chiang, Ann-Shyn, Jackson, George R., Sang, Tzu-Kang, Frankel, Wayne N.

Journal:

Year:

2011

Language:

english

File:

PDF, 12.27 MB

english, 2011

24

Quantitative Models of the Mechanisms That Control Genome-Wide Patterns of Transcription Factor Binding during Early Drosophila Development

Kaplan, Tommy, Li, Xiao-Yong, Sabo, Peter J., Thomas, Sean, Stamatoyannopoulos, John A., Biggin, Mark D., Eisen, Michael B., Barsh, Gregory S.

Journal:

Year:

2011

Language:

english

File:

PDF, 2.33 MB

english, 2011

25

CSP and Takeout Genes Modulate the Switch between Attraction and Repulsion during Behavioral Phase Change in the Migratory Locust

Guo, Wei, Wang, Xianhui, Ma, Zongyuan, Xue, Liang, Han, Jingyao, Yu, Dan, Kang, Le, Copenhaver, Gregory P.

Journal:

Year:

2011

Language:

english

File:

PDF, 1.53 MB

english, 2011

26

Srf1 Is a Novel Regulator of Phospholipase D Activity and Is Essential to Buffer the Toxic Effects of C16:0 Platelet Activating Factor

Kennedy, Michael A., Kabbani, Nazir, Lambert, Jean-Philippe, Swayne, Leigh Anne, Ahmed, Fida, Figeys, Daniel, Bennett, Steffany A. L., Bryan, Jennnifer, Baetz, Kristin, Madhani, Hiten D.

Journal:

Year:

2011

Language:

english

File:

PDF, 1.25 MB

english, 2011

27

Genome-Wide Association Studies of the PR Interval in African Americans

Smith, J. Gustav, Magnani, Jared W., Palmer, Cameron, Meng, Yan A., Soliman, Elsayed Z., Musani, Solomon K., Kerr, Kathleen F., Schnabel, Renate B., Lubitz, Steven A., Sotoodehnia, Nona, Redline, Susa

Journal:

Year:

2011

Language:

english

File:

PDF, 438 KB

english, 2011

28

Single-Tissue and Cross-Tissue Heritability of Gene Expression Via Identity-by-Descent in Related or Unrelated Individuals

Price, Alkes L., Helgason, Agnar, Thorleifsson, Gudmar, McCarroll, Steven A., Kong, Augustine, Stefansson, Kari, Gibson, Greg

Journal:

Year:

2011

Language:

english

File:

PDF, 360 KB

english, 2011

29

The Architecture of Gene Regulatory Variation across Multiple Human Tissues: The MuTHER Study

Nica, Alexandra C., Parts, Leopold, Glass, Daniel, Nisbet, James, Barrett, Amy, Sekowska, Magdalena, Travers, Mary, Potter, Simon, Grundberg, Elin, Small, Kerrin, Hedman, Åsa K., Bataille, Veronique,

Journal:

Year:

2011

Language:

english

File:

PDF, 451 KB

english, 2011

30

The Genome Sequence of the Leaf-Cutter Ant Atta cephalotes Reveals Insights into Its Obligate Symbiotic Lifestyle

Suen, Garret, Teiling, Clotilde, Li, Lewyn, Holt, Carson, Abouheif, Ehab, Bornberg-Bauer, Erich, Bouffard, Pascal, Caldera, Eric J., Cash, Elizabeth, Cavanaugh, Amy, Denas, Olgert, Elhaik, Eran, Favé,

Journal:

Year:

2011

Language:

english

File:

PDF, 729 KB

english, 2011

31

Whole-Genome Comparison Reveals Novel Genetic Elements That Characterize the Genome of Industrial Strains of Saccharomyces cerevisiae

Borneman, Anthony R., Desany, Brian A., Riches, David, Affourtit, Jason P., Forgan, Angus H., Pretorius, Isak S., Egholm, Michael, Chambers, Paul J., Sherlock, Gavin

Journal:

Year:

2011

Language:

english

File:

PDF, 855 KB

english, 2011

32

A Study of CNVs As Trait-Associated Polymorphisms and As Expression Quantitative Trait Loci

Gamazon, Eric R., Nicolae, Dan L., Cox, Nancy J., Cheung, Vivian G.

Journal:

Year:

2011

Language:

english

File:

PDF, 292 KB

english, 2011

33

Parallel Evolution of a Type IV Secretion System in Radiating Lineages of the Host-Restricted Bacterial Pathogen Bartonella

Engel, Philipp, Salzburger, Walter, Liesch, Marius, Chang, Chao-Chin, Maruyama, Soichi, Lanz, Christa, Calteau, Alexandra, Lajus, Aurélie, Médigue, Claudine, Schuster, Stephan C., Dehio, Christoph, Gu

Journal:

Year:

2011

Language:

english

File:

PDF, 789 KB

english, 2011

34

Characterization of Transcriptome Remodeling during Cambium Formation Identifies MOL1 and RUL1 As Opposing Regulators of Secondary Growth

Agusti, Javier, Lichtenberger, Raffael, Schwarz, Martina, Nehlin, Lilian, Greb, Thomas, Qu, Li-Jia

Journal:

Year:

2011

Language:

english

File:

PDF, 2.61 MB

english, 2011

35

Pervasive Adaptive Protein Evolution Apparent in Diversity Patterns around Amino Acid Substitutions in Drosophila simulans

Sattath, Shmuel, Elyashiv, Eyal, Kolodny, Oren, Rinott, Yosef, Sella, Guy, McVean, Gil

Journal:

Year:

2011

Language:

english

File:

PDF, 440 KB

english, 2011

36

The Drosophila Zinc Finger Protein Trade Embargo Is Required for Double Strand Break Formation in Meiosis

Lake, Cathleen M., Nielsen, Rachel J., Hawley, R. Scott, Copenhaver, Gregory P.

Journal:

Year:

2011

Language:

english

File:

PDF, 4.21 MB

english, 2011

37

Mapping of the Disease Locus and Identification of ADAMTS10 As a Candidate Gene in a Canine Model of Primary Open Angle Glaucoma

Kuchtey, John, Olson, Lana M., Rinkoski, Tommy, MacKay, Edward O., Iverson, T. M., Gelatt, Kirk N., Haines, Jonathan L., Kuchtey, Rachel W., Barsh, Gregory S.

Journal:

Year:

2011

Language:

english

File:

PDF, 1.74 MB

english, 2011

38

Genome-Wide Association of Familial Late-Onset Alzheimer's Disease Replicates BIN1 and CLU and Nominates CUGBP2 in Interaction with APOE

Wijsman, Ellen M., Pankratz, Nathan D., Choi, Yoonha, Rothstein, Joseph H., Faber, Kelley M., Cheng, Rong, Lee, Joseph H., Bird, Thomas D., Bennett, David A., Diaz-Arrastia, Ramon, Goate, Alison M., F

Journal:

Year:

2011

Language:

english

File:

PDF, 2.89 MB

english, 2011

39

The Cardiac Transcription Network Modulated by Gata4, Mef2a, Nkx2.5, Srf, Histone Modifications, and MicroRNAs

Schlesinger, Jenny, Schueler, Markus, Grunert, Marcel, Fischer, Jenny J., Zhang, Qin, Krueger, Tammo, Lange, Martin, Tönjes, Martje, Dunkel, Ilona, Sperling, Silke R., Schübeler, Dirk

Journal:

Year:

2011

Language:

english

File:

PDF, 2.35 MB

english, 2011

40

Correlated Evolution of Nearby Residues in Drosophilid Proteins

Callahan, Benjamin, Neher, Richard A., Bachtrog, Doris, Andolfatto, Peter, Shraiman, Boris I., McVean, Gil

Journal:

Year:

2011

Language:

english

File:

PDF, 609 KB

english, 2011

41

AID Induces Double-Strand Breaks at Immunoglobulin Switch Regions and c-MYC Causing Chromosomal Translocations in Yeast THO Mutants

Ruiz, José F., Gómez-González, Belén, Aguilera, Andrés, Maizels, Nancy

Journal:

Year:

2011

Language:

english

File:

PDF, 591 KB

english, 2011

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