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1

Crosslinking of the complementary strands of DNA by UV light: dependence on the oligonucleotide composition of the UV irradiated DNA

Karel Nejedlý, Radim Kittner, Šárka Pospı́šilová, Jaroslav Kypr

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression

Year:

2001

Language:

english

File:

PDF, 312 KB

english, 2001

2

Circular dichroism and conformational polymorphism of DNA

Kypr, J., Kejnovska, I., Renciuk, D., Vorlickova, M.

Journal:

Nucleic Acids Research

Year:

2009

Language:

english

File:

PDF, 8.70 MB

english, 2009

3

N.m.r. and c.d. studies of the DNA fragments d(TATATATA) and d(TATATA) in solution

Vladimir Sklenář, Jaroslav Kypr, Ad Bax, Gerald Zon, Michaela Vorličkova

Journal:

International Journal of Biological Macromolecules

Year:

1989

Language:

english

File:

PDF, 411 KB

english, 1989

4

Millimolar concentrations of zinc and other metal cations cause sedimentation of DNA

Kejnovsky, E., Kypr, J.

Journal:

Nucleic Acids Research

Year:

1998

Language:

english

File:

PDF, 98 KB

english, 1998

5

Circular dichroism and guanine quadruplexes

Michaela Vorlíčková, Iva Kejnovská, Janos Sagi, Daniel Renčiuk, Klára Bednářová, Jitka Motlová, Jaroslav Kypr

Journal:

Year:

2012

Language:

english

File:

PDF, 2.04 MB

english, 2012

6

Biased distribution of adenine and thymine in gene nucleotide sequences

Jan Mrázek, Jaroslav Kypr

Journal:

Journal of Molecular Evolution

Year:

1994

Language:

english

File:

PDF, 681 KB

english, 1994

7

Mosaic structure of the DNA molecules of the human chromosomes 21 and 22

David Häring, Jaroslav Kypr

Journal:

Molecular Biology Reports

Year:

2001

Language:

english

File:

PDF, 442 KB

english, 2001

8

Resistance of native protein shapes to random single point mutations in their genes

Journal:

Journal of Theoretical Biology

Year:

1990

Language:

english

File:

PDF, 86 KB

english, 1990

9

Possible mechanism of the allosteric activation of cAMP receptor protein

Jaroslav Kypr, Jan Mrázek

Journal:

Biochemical and Biophysical Research Communications

Year:

1985

Language:

english

File:

PDF, 328 KB

english, 1985

10

Different intrastrand and interstrand contributions to stacking account for roll variations at the alternating purine-pyrimidine sequences in A-DNA and A-RNA

Jiří Šponer, Jaroslav Kypr

Journal:

Journal of Molecular Biology

Year:

1991

Language:

english

File:

PDF, 455 KB

english, 1991

11

Conformational transitions of a synthetic DNA poly(dA-dU). poly(dA-dU) in concentrated solutions of caesium fluoride

Michaela Vorlíčková, Jaroslav Kypr

Journal:

International Journal of Biological Macromolecules

Year:

1984

Language:

english

File:

PDF, 379 KB

english, 1984

12

Conformational Isomerizations of Poly(dA-dT) Are Dramatically Influenced by a Substitution of a Minor Amount of Adenine by Purine or Amino 2 purine

Vorlíčková, Michaela, Sági, János, Szabolcs, Anna, Ebinger, Kati, Fellegvári, Irén, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1993

Language:

english

File:

PDF, 700 KB

english, 1993

13

CD of the synthetic RNA duplexes poly[r(A-T)] and poly[r(A-U)] in salt and ethanolic solutions

Michaela Voriíčková, Jaroslav Kypr, Thomas M. Jovin, Max Planck

Journal:

Year:

1990

Language:

english

File:

PDF, 598 KB

english, 1990

14

Nucleotide composition bias and CpG dinucleotide content in the genomes of HIV and HTLV 12

Jaroslav Kypr, Jan Mrázek, Josef Reich

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression

Year:

1989

Language:

english

File:

PDF, 330 KB

english, 1989

15

The Longest (A+T) and (G+C) Blocks in the Human and Other Genomes

Hrabcová, Iva, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2008

Language:

english

File:

PDF, 609 KB

english, 2008

16

Circular dichroism spectroscopy reveals invariant conformation of guanine runs in DNA

Jaroslav Kypr, Michaela Vorlíčková

Journal:

Year:

2002

Language:

english

File:

PDF, 74 KB

english, 2002

17

Reading frames of HIV genes

Jaroslav Kypr, Jan Mrázek

Journal:

Journal of Theoretical Biology

Year:

1989

Language:

english

File:

PDF, 95 KB

english, 1989

18

Conformational properties of DNA fragments containing GAC trinucleotide repeats associated with skeletal displasias

Michaela Vorlícková, Iva Kejnovská, Marcela Tumová, Jaroslav Kypr

Journal:

European Biophysics Journal

Year:

2001

Language:

english

File:

PDF, 178 KB

english, 2001

19

Conformational transitions of poly(dA-dT).poly(dA-dT) in ethanolic solutions

Vorlíčková, Michaela, Sedláček, Pavel, Kypr, Jaroslav, Ŝponar, Jaroslav

Journal:

Nucleic Acids Research

Year:

1982

Language:

english

File:

PDF, 427 KB

english, 1982

20

Relationships among Rise, Cup, Roll and Stagger in DNA Suggested by Empirical Potential Studies of Base Stacking

Šponer, Jiří, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1993

Language:

english

File:

PDF, 794 KB

english, 1993

21

Nucleotide composition of genes and hydrophobicity of the encoded proteins

Jan Mázek, Jaroslav Kypr

Journal:

Year:

1992

Language:

english

File:

PDF, 222 KB

english, 1992

22

Circular dichroism spectroscopy analysis of conformational transitions of a 54 base pair DNA duplex composed of alternating CGCGCG and TATATA blocks

Jaroslav Kypr, Jiří Štěpán, Jana Chládková, Michaela Vorlíčková

Journal:

Biospectroscopy

Year:

1999

Language:

english

File:

PDF, 283 KB

english, 1999

23

Phosphorus nmr spectra of natural DNA fragments in the course of the B-to-A conformational transition

Jaroslav Kypr, Vladimír Sklenář, Michaela Vorlíč-ková

Journal:

Year:

1986

Language:

english

File:

PDF, 549 KB

english, 1986

24

Guanine quadruplex formation by RNA/DNA hybrid analogs of Oxytricha telomere G4T4G4 fragment

Jitka Vondrušková, Jaroslav Kypr, Iva Kejnovská, Markéta Fialová, Michaela Vorlíčková

Journal:

Year:

2008

Language:

english

File:

PDF, 430 KB

english, 2008

25

UV Light-induced Duplex-to-duplex Crosslinking of DNA Molecules in Aqueous Ethanol Solutions

Šárka PospíŠlová, Jaroslav Kypr

Journal:

Photochemistry and Photobiology

Year:

1998

Language:

english

File:

PDF, 609 KB

english, 1998

26

Thymine Methyl Groups Stabilize the Putative A-Form of the Synthetic DNA Poly(amino2dA-dT)

Kypr, Jaroslav, Sagi, Janos, Szakonyi, Erika, Ebinger, Katalin, Penazova, Hana, Chladkova, Jana, Vorlickova, Michaela

Journal:

Year:

1994

Language:

english

File:

PDF, 743 KB

english, 1994

27

Nucleotide Sequences Flanking Dinucleotide Microsatellites in In the Human, Mouse and Drosophila Genomes

Matula, Michal, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1999

Language:

english

File:

PDF, 504 KB

english, 1999

28

Dimerization of the guanine-adenine repeat strands of DNA

Vorlickova, M., Kejnovska, I., Kovanda, J., Kypr, J.

Journal:

Nucleic Acids Research

Year:

1999

Language:

english

File:

PDF, 160 KB

english, 1999

29

GLOBIC: a very fast microcomputer program for fingerprinting, characterization and comparision of long nucleotide sequences

J. Mrázek, J. Kypr

Year:

1992

Language:

english

File:

PDF, 534 KB

english, 1992

30

Recognition and use of the unusual X-DNA as a primer-template by Klenow DNA polymerase enzyme

J. Sági, M. Vorlíčková, J. Kypr, L. Ötvös

Journal:

Biochemical and Biophysical Research Communications

Year:

1989

Language:

english

File:

PDF, 478 KB

english, 1989

31

Divalent Zinc Cations Induce the Formation of Two Distinct Homoduplexes of a d(GA)20 DNA Sequence

Ortiz-Lombardia, Miguel, Eritja, Ramon, Azorin, Fernando, Kypr, Jaroslav, Tejralova, Iva, Vorlickova, Michaela

Journal:

Year:

1995

Language:

english

File:

PDF, 1.91 MB

english, 1995

32

Alkyl Substituent in Place of the Thymine Methyl Group Controls the A-X Conformational Bimorphism in Poly(dA-dT)

Vorličková, Michaela, Sági, János, Hejtmánková, Ivana, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1991

Language:

english

File:

PDF, 293 KB

english, 1991

33

Structural Polymorphism of d(GA · TC)n DNA Sequences: Intramolecular and Intermolecular Associations of the Individual Strands

J.M. Casasnovas, D. Huertas, M. Ortiz-Lombardı́a, J. Kypr, F. Azorı́n

Journal:

Journal of Molecular Biology

Year:

1993

File:

PDF, 759 KB

1993

34

Factors influencing resistance of UV-irradiated DNA to the restriction endonuclease cleavage

Eduard Kejnovský, Karel Nejedlý, Jaroslav Kypr

Journal:

International Journal of Biological Macromolecules

Year:

2004

Language:

english

File:

PDF, 226 KB

english, 2004

35

Caesium fluoride-induced changes in the c.d. spectra of synthetic DNA fragments

Jaroslav Kypr, Michaela Vorlíčková, Gerald Zon, Roland Weiss, Luboš Arnold, Jiří Smrt

Journal:

International Journal of Biological Macromolecules

Year:

1991

Language:

english

File:

PDF, 462 KB

english, 1991

36

mRNA-Seq of Single Prostate Cancer Circulating Tumor Cells Reveals Recapitulation of Gene Expression and Pathways Found in Prostate Cancer

Cann, Gordon M., Gulzar, Zulfiqar G., Cooper, Samantha, Li, Robin, Luo, Shujun, Tat, Mai, Stuart, Sarah, Schroth, Gary, Srinivas, Sandhya, Ronaghi, Mostafa, Brooks, James D., Talasaz, AmirAli H., Kypr

Journal:

Year:

2012

Language:

english

File:

PDF, 714 KB

english, 2012

37

DNA in phosphorus atom representation: the heteronomous double helices of poly(dA)·poly(dT) and poly(dG)·poly(dC) and simulation of the yeast genome and of a human chromosome DNA

Petr Hanzálek, Jaroslav Kypr

Journal:

Journal of Theoretical Biology

Year:

2005

Language:

english

File:

PDF, 1.12 MB

english, 2005

38

Structures of poly(dA-dT,ip5dU) containing various small amounts of the antiherpetic 5-isopropyl-2′-deoxyuridine

János Sági, Jitka Štokrová, Michaela Vorlíčková, Alena Spánová, Jaroslav Kypr, Éva Ruff, László Ötvös

Journal:

Biochemical and Biophysical Research Communications

Year:

1992

Language:

english

File:

PDF, 1.94 MB

english, 1992

39

Comparison of the solution and crystal conformations of (G + C)-rich fragments of DNA

Vorlícková, M., Subirana, J.A., Chládková, J., Tejralová, I., Huynh-Dinh, T., Arnold, L., Kypr, J.

Journal:

Biophysical Journal

Year:

1996

Language:

english

File:

PDF, 856 KB

english, 1996

40

Conformational properties of DNA strands containing guanine-adenine and thymine-adenine repeats

Vorlickova, M., Kejnovska, I., Kovanda, J., Kypr, J.

Journal:

Nucleic Acids Research

Year:

1998

Language:

english

File:

PDF, 176 KB

english, 1998

41

Dimethylsulfoxide-stabilized conformer of guanine-adenine repeat strand of DNA

Jaroslav Kypr, Michaela Vorlíčková

Journal:

Year:

2001

Language:

english

File:

PDF, 143 KB

english, 2001

42

Genomic DNA Regions Whose Complementary Strands Are Prone to UV Light-Induced Crosslinking

Karel Nejedlý, Radim Kittner, Jaroslav Kypr

Journal:

Archives of Biochemistry and Biophysics

Year:

2001

Language:

english

File:

PDF, 160 KB

english, 2001

43

An A-type double helix of DNA having B-type puckering of the deoxyribose rings

Lukáš Trantı́rek, Richard Štefl, Michaela Vorlı́čková, Jaroslav Koča, Vladimı́r Sklenářář, Jaroslav Kypr

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 435 KB

english, 2000

44

Conformational properties of DNA containing (CCA)n and (TGG)n trinucleotide repeats

Michal Zemánek, Jaroslav Kypr, Michaela Vorlíčková

Journal:

International Journal of Biological Macromolecules

Year:

2005

Language:

english

File:

PDF, 400 KB

english, 2005

45

Lambda phage protein Nu 1 contains the conserved DNA binding fold of repressors

Jaroslav Kypr, Jan Mrázek

Journal:

Journal of Molecular Biology

Year:

1986

Language:

english

File:

PDF, 174 KB

english, 1986

46

Unusual codon usage of HIV

KYPR, JAROSLAV, MRÁZEK, JAN

Journal:

Year:

1987

File:

PDF, 137 KB

1987

47

Middle-range clustering of nucleotides in genomes

Mrázek, Jan, Kypr, Jaroslav

Journal:

Year:

1995

Language:

english

File:

PDF, 398 KB

english, 1995

48

Computer program Jamsek combining statistical and stereochemical rules for the prediction of protein secondary structure

Mrázek, Jan, Kypr, Jaroslav

Journal:

Year:

1988

Language:

english

File:

PDF, 456 KB

english, 1988

49

Ethanol is a better inducer of DNA guanine tetraplexes than potassium cations

Michaela Vorlíčková, Klára Bednářová, Jaroslav Kypr

Journal:

Year:

2006

Language:

english

File:

PDF, 405 KB

english, 2006

50

Genomic occurrence of microsatellites containing integral and non-integral repeat numbers

Iva Hrabcová, Jaroslav Kypr

Journal:

Biochemical and Biophysical Research Communications

Year:

2003

Language:

english

File:

PDF, 396 KB

english, 2003

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