Savijoki,: search on Z-Library

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1

Proteolytic systems of lactic acid bacteria

Kirsi Savijoki, Hanne Ingmer, Pekka Varmanen

Journal:

Applied Microbiology and Biotechnology

Year:

2006

Language:

english

File:

PDF, 262 KB

english, 2006

2

Synthesis and biological evaluation of hybrid quinolone-based quaternary ammonium antibacterial agents

Fedorowicz, Joanna, Sączewski, Jarosław, Konopacka, Agnieszka, Waleron, Krzysztof, Lejnowski, Dawid, Ciura, Krzesimir, Tomašič, Tihomir, Skok, Žiga, Savijoki, Kirsi, Morawska, Małgorzata, Gilbert-Gira

Journal:

European Journal of Medicinal Chemistry

Year:

2019

Language:

english

File:

PDF, 1.34 MB

english, 2019

3

Proteomic analysis of Chlamydia pneumoniae-infected HL cells reveals extensive degradation of cytoskeletal proteins

Kirsi Savijoki, Joni Alvesalo, Pia Vuorela, Maija Leinonen, Nisse Kalkkinen

Journal:

FEMS Immunology & Medical Microbiology

Year:

2008

Language:

english

File:

PDF, 639 KB

english, 2008

4

New Insights into Staphylococcus aureus Stress Tolerance and Virulence Regulation from an Analysis of the Role of the ClpP Protease in the Strains Newman, COL, and SA564

Frees, Dorte, Andersen, Julie Hove, Hemmingsen, Lene, Koskenniemi, Kerttu, Bæk, Kristoffer T., Muhammed, Musemma Kedir, Gudeta, Dereje Dadi, Nyman, Tuula A., Sukura, Antti, Varmanen, Pekka, Savijoki,

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 3.00 MB

english, 2012

5

Clp ATPases and ClpP proteolytic complexes regulate vital biological processes in low GC, Gram-positive bacteria

Dorte Frees, Kirsi Savijoki, Pekka Varmanen, Hanne Ingmer

Journal:

Molecular Microbiology

Year:

2007

Language:

english

File:

PDF, 275 KB

english, 2007

6

Comparative Proteome Cataloging of Lactobacillus rhamnosus Strains GG and Lc705

Savijoki, Kirsi, Lietzén, Niina, Kankainen, Matti, Alatossava, Tapani, Koskenniemi, Kerttu, Varmanen, Pekka, Nyman, Tuula A.

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 2.50 MB

english, 2011

7

Red-Brown Pigmentation of Acidipropionibacterium jensenii Is Tied to Haemolytic Activity and cyl-Like Gene Cluster

Deptula, Paulina, Loivamaa, Iida, Smolander, Olli-Pekka, Laine, Pia, Roberts, Richard J., Piironen, Vieno, Paulin, Lars, Savijoki, Kirsi, Auvinen, Petri, Varmanen, Pekka

Journal:

Year:

2019

File:

PDF, 2.34 MB

2019

8

Optimization of a High-Throughput 384-Well Plate-Based Screening Platform with Staphylococcus aureus ATCC 25923 and Pseudomonas aeruginosa ATCC 15442 Biofilms

Gilbert-Girard, Shella, Savijoki, Kirsi, Yli-Kauhaluoma, Jari, Fallarero, Adyary

Journal:

International Journal of Molecular Sciences

Year:

2020

File:

PDF, 3.99 MB

2020

9

Uncovering Surface-Exposed Antigens of Lactobacillus rhamnosus by Cell Shaving Proteomics and Two-Dimensional Immunoblotting

Espino, Eva, Koskenniemi, Kerttu, Mato-Rodriguez, Lourdes, Nyman, Tuula A., Reunanen, Justus, Koponen, Johanna, Öhman, Tiina, Siljamäki, Pia, Alatossava, Tapani, Varmanen, Pekka, Savijoki, Kirsi

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 7.22 MB

english, 2015

10

Alpha- and β-casein components of host milk induce biofilm formation in the mastitis bacterium Streptococcus uberis

Emilia Varhimo, Pekka Varmanen, Adyary Fallarero, Malena Skogman, Satu Pyörälä, Antti Iivanainen, Antti Sukura, Pia Vuorela, Kirsi Savijoki

Journal:

Veterinary Microbiology

Year:

2011

Language:

english

File:

PDF, 607 KB

english, 2011

11

Comparative Proteomic Analysis of Hymenolepis diminuta Cysticercoid and Adult Stages

Sulima, Anna, Savijoki, Kirsi, Bień, Justyna, Näreaho, Anu, Sałamatin, Rusłan, Conn, David Bruce, Młocicki, Daniel

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 693 KB

english, 2018

12

Metatranscriptomic assessment of burn wound infection clearance

Ojala, Teija, Lindford, Andrew, Savijoki, Kirsi, Lagus, Heli, Tommila, Jenni, Medlar, Alan, Kuusela, Pentti, Varmanen, Pekka, Holm, Liisa, Vuola, Jyrki, Kankuri, Esko, Kankainen, Matti

Journal:

Clinical Microbiology and Infection

Year:

2020

File:

PDF, 942 KB

2020

13

Proteomics and Transcriptomics Characterization of Bile Stress Response in Probiotic Lactobacillus rhamnosus GG

Koskenniemi, K., Laakso, K., Koponen, J., Kankainen, M., Greco, D., Auvinen, P., Savijoki, K., Nyman, T. A., Surakka, A., Salusjarvi, T., de Vos, W. M., Tynkkynen, S., Kalkkinen, N., Varmanen, P.

Journal:

Molecular & Cellular Proteomics

Year:

2011

Language:

english

File:

PDF, 2.01 MB

english, 2011

14

Immunoproteomics and Surfaceomics of the Adult Tapeworm Hymenolepis diminuta

Młocicki, Daniel, Sulima, Anna, Bień, Justyna, Näreaho, Anu, Zawistowska-Deniziak, Anna, Basałaj, Katarzyna, Sałamatin, Rusłan, Conn, David Bruce, Savijoki, Kirsi

Journal:

Frontiers in Immunology

Year:

2018

Language:

english

File:

PDF, 2.33 MB

english, 2018

15

Screening of FDA-Approved Drugs Using a 384-Well Plate-Based Biofilm Platform: The Case of Fingolimod

Gilbert-Girard, Shella, Savijoki, Kirsi, Yli-Kauhaluoma, Jari, Fallarero, Adyary

Journal:

Year:

2020

File:

PDF, 3.86 MB

2020

16

Strategies to Prevent Biofilm Infections on Biomaterials: Effect of Novel Naturally-Derived Biofilm Inhibitors on a Competitive Colonization Model of Titanium by Staphylococcus aureus and SaOS-2 Cells

Reigada, InÃ©s, PÃ©rez-Tanoira, RamÃ³n, Patel, Jayendra Z., Savijoki, Kirsi, Yli-Kauhaluoma, Jari, Kinnari, Teemu J., Fallarero, Adyary

Journal:

Year:

2020

File:

PDF, 5.00 MB

2020

17

Growth Mode and Carbon Source Impact the Surfaceome Dynamics of Lactobacillus rhamnosus GG

Savijoki, Kirsi, Nyman, Tuula A., Kainulainen, Veera, Miettinen, Ilkka, Siljamäki, Pia, Fallarero, Adyary, Sandholm, Jouko, Satokari, Reetta, Varmanen, Pekka

Journal:

Frontiers in Microbiology

Year:

2019

Language:

english

File:

PDF, 5.36 MB

english, 2019

18

Combined Effect of Naturally-Derived Biofilm Inhibitors and Differentiated HL-60 Cells in the Prevention of Staphylococcus aureus Biofilm Formation

Reigada, InÃ©s, Guarch-PÃ©rez, Clara, Patel, Jayendra Z., Riool, Martijn, Savijoki, Kirsi, Yli-Kauhaluoma, Jari, Zaat, Sebastian A. J., Fallarero, Adyary

Journal:

Year:

2020

File:

PDF, 5.27 MB

2020

19

Ciprofloxacin induces mutagenesis to antibiotic resistance independent of UmuC in Streptococcus uberis

Emilia Varhimo, Kirsi Savijoki, Hanna Jefremoff, Jari Jalava, Antti Sukura, Pekka Varmanen

Journal:

Environmental Microbiology

Year:

2008

Language:

english

File:

PDF, 112 KB

english, 2008

20

Two-Dimensional Difference Gel Electrophoresis Analysis of Streptococcus uberis in Response to Mutagenesis-Inducing Ciprofloxacin Challenge

Poutanen, Marjo, Varhimo, Emilia, Kalkkinen, Nisse, Sukura, Antti, Varmanen, Pekka, Savijoki, Kirsi

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 4.44 MB

english, 2009

21

The Cell Wall Polymer Lipoteichoic Acid Becomes Nonessential in Staphylococcus aureus Cells Lacking the ClpX Chaperone

Bæk, Kristoffer T., Bowman, Lisa, Millership, Charlotte, Dupont Søgaard, Mia, Kaever, Volkhard, Siljamäki, Pia, Savijoki, Kirsi, Varmanen, Pekka, Nyman, Tuula A., Gründling, Angelika, Frees, Dorte

Journal:

Year:

2016

Language:

english

File:

PDF, 1.68 MB

english, 2016

22

Effect of acid stress on protein expression and phosphorylation in Lactobacillus rhamnosus GG

Johanna Koponen, Kati Laakso, Kerttu Koskenniemi, Matti Kankainen, Kirsi Savijoki, Tuula A. Nyman, Willem M. de Vos, Soile Tynkkynen, Nisse Kalkkinen, Pekka Varmanen

Journal:

Journal of Proteomics

Year:

2012

Language:

english

File:

PDF, 1.40 MB

english, 2012

23

Secretome profiling of Propionibacterium freudenreichii reveals highly variable responses even among the closely related strains

Frohnmeyer, Esther, Deptula, Paulina, Nyman, Tuula A., Laine, Pia K. S., Vihinen, Helena, Paulin, Lars, Auvinen, Petri, Jokitalo, Eija, Piironen, Vieno, Varmanen, Pekka, Savijoki, Kirsi

Journal:

Microbial Biotechnology

Year:

2018

Language:

english

File:

PDF, 1.17 MB

english, 2018

24

De novo assembly of genomes from long sequence reads reveals uncharted territories of Propionibacterium freudenreichii

Deptula, Paulina, Laine, Pia K., Roberts, Richard J., Smolander, Olli-Pekka, Vihinen, Helena, Piironen, Vieno, Paulin, Lars, Jokitalo, Eija, Savijoki, Kirsi, Auvinen, Petri, Varmanen, Pekka

Journal:

Year:

2017

Language:

english

File:

PDF, 3.74 MB

english, 2017

25

Growth phase-associated changes in the proteome and transcriptome of Lactobacillus rhamnosus GG in industrial-type whey medium

Kati Laakso, Kerttu Koskenniemi, Johanna Koponen, Matti Kankainen, Anu Surakka, Tuomas Salusjärvi, Petri Auvinen, Kirsi Savijoki, Tuula A. Nyman, Nisse Kalkkinen, Soile Tynkkynen, Pekka Varmanen

Journal:

Microbial Biotechnology

Year:

2011

Language:

english

File:

PDF, 1.29 MB

english, 2011

26

Comparative analysis of excretory-secretory antigens ofTrichinella spiralisandTrichinella britovimuscle larvae by two-dimensional difference gel electrophoresis and immunoblotting

Justyna Bien, Anu Näreaho, Pekka Varmanen, Katarzyna Gozdzik, Bozena Moskwa, Wladyslaw Cabaj, Tuula A Nyman, Kirsi Savijoki

Journal:

Proteome Science

Year:

2012

Language:

english

File:

PDF, 601 KB

english, 2012

27

Penicillin G increases the synthesis of a suicidal marker (CidC) and virulence (HlgBC) proteins in Staphylococcus aureus biofilm cells

Savijoki, Kirsi, Skogman, Malena, Fallarero, Adyary, Nyman, Tuula A., Sukura, Antti, Vuorela, Pia, Varmanen, Pekka

Journal:

International Journal of Medical Microbiology

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

28

Proteome Analysis of Lactobacillus rhamnosus GG Using 2-D DIGE and Mass Spectrometry Shows Differential Protein Production in Laboratory and Industrial-Type Growth Media

Koskenniemi, Kerttu, Koponen, Johanna, Kankainen, Matti, Savijoki, Kirsi, Tynkkynen, Soile, de Vos, Willem M., Kalkkinen, Nisse, Varmanen, Pekka

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.58 MB

english, 2009

29

A Streptococcus uberis transposon mutant screen reveals a negative role for LiaR homologue in biofilm formation

Salomäki, T., Karonen, T., Siljamäki, P., Savijoki, K., Nyman, T.A., Varmanen, P., Iivanainen, A.

Journal:

Journal of Applied Microbiology

Year:

2015

Language:

english

File:

PDF, 406 KB

english, 2015

30

Chloroquine fumardiamides as novel quorum sensing inhibitors

Beus, Maja, Savijoki, Kirsi, Patel, Jayendra Z., Yli-Kauhaluoma, Jari, Fallarero, Adyary, Zorc, Branka

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2020

File:

PDF, 1.25 MB

2020

31

New convenient defined media for [35S]methionine labelling and proteomic analyses of probiotic lactobacilli

K. Savijoki, A. Suokko, A. Palva, P. Varmanen

Journal:

Letters in Applied Microbiology

Year:

2006

Language:

english

File:

PDF, 595 KB

english, 2006

32

High level heterologous protein production in Lactococcus and Lactobacillus using a new secretion system based on the Lactobacillus brevis S-layer signals

Kirsi Savijoki, Minna Kahala, Airi Palva

Journal:

Year:

1997

Language:

english

File:

PDF, 255 KB

english, 1997

33

Genomics and Proteomics Provide New Insight into the Commensal and Pathogenic Lifestyles of Bovine- and Human-Associated Staphylococcus epidermidis Strains

Savijoki, Kirsi, Iivanainen, Antti, Siljamäki, Pia, Laine, Pia K., Paulin, Lars, Karonen, Taru, Pyörälä, Satu, Kankainen, Matti, Nyman, Tuula A., Salomäki, Tiina, Koskinen, Patrik, Holm, Liisa, Simojo

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 5.46 MB

english, 2014

34

Mass spectrometry analysis of the excretory-secretory (E-S) products of the model cestode Hymenolepis diminut a reveals their immunogenic properties and the presence of new E-S proteins in cestodes

Bień, Justyna, Sałamatin, Rusłan, Sulima, Anna, Savijoki, Kirsi, Bruce Conn, David, Näreaho, Anu, Młocicki, Daniel

Journal:

Acta Parasitologica

Year:

2016

Language:

english

File:

PDF, 2.27 MB

english, 2016

35

Characterization of a Mobile clpL Gene from Lactobacillus rhamnosus

Suokko, A., Savijoki, K., Malinen, E., Palva, A., Varmanen, P.

Journal:

Applied and Environmental Microbiology

Year:

2005

Language:

english

File:

PDF, 294 KB

english, 2005

36

In vivo expression of the Lactobacillus brevis S-layer gene.

Kahala, M, Savijoki, K, Palva, A

Journal:

Journal of Bacteriology

Year:

1997

Language:

english

File:

PDF, 250 KB

english, 1997

37

BluB/CobT2 fusion enzyme activity reveals mechanisms responsible for production of active form of vitamin B12byPropionibacterium freudenreichii

Deptula, Paulina, Kylli, Petri, Chamlagain, Bhawani, Holm, Liisa, Kostiainen, Risto, Piironen, Vieno, Savijoki, Kirsi, Varmanen, Pekka

Journal:

Microbial Cell Factories

Year:

2015

Language:

english

File:

PDF, 1.43 MB

english, 2015

38

Identification of a Novel Streptococcal Gene Cassette Mediating SOS Mutagenesis in Streptococcus uberis

Varhimo, E., Savijoki, K., Jalava, J., Kuipers, O. P., Varmanen, P.

Journal:

Journal of Bacteriology

Year:

2007

Language:

english

File:

PDF, 543 KB

english, 2007

39

Purification and Molecular Characterization of a Tripeptidase (PepT) from Lactobacillus helveticus

Savijoki, K., Palva, A.

Journal:

Applied and Environmental Microbiology

Year:

2000

Language:

english

File:

PDF, 716 KB

english, 2000

40

Identification of immunogenic proteins of the cysticercoid of Hymenolepis diminuta

Sulima, Anna, Bień, Justyna, Savijoki, Kirsi, Näreaho, Anu, Sałamatin, Rusłan, Conn, David Bruce, Młocicki, Daniel

Journal:

Parasites & Vectors

Year:

2017

Language:

english

File:

PDF, 963 KB

english, 2017

41

Food-Like Growth Conditions Support Production of Active Vitamin B12 by Propionibacterium freudenreichii 2067 without DMBI, the Lower Ligand Base, or Cobalt Supplementation

Deptula, Paulina, Chamlagain, Bhawani, Edelmann, Minnamari, Sangsuwan, Panchanit, Nyman, Tuula A., Savijoki, Kirsi, Piironen, Vieno, Varmanen, Pekka

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 1.32 MB

english, 2017

42

ClpL is essential for induction of thermotolerance and is potentially part of the HrcA regulon in Lactobacillus gasseri

Aki Suokko, Marjo Poutanen, Kirsi Savijoki, Nisse Kalkkinen, Pekka Varmanen

Journal:

Year:

2008

Language:

english

File:

PDF, 496 KB

english, 2008

43

Comparative Exoprotein Profiling of Different Staphylococcus epidermidis Strains Reveals Potential Link between Nonclassical Protein Export and Virulence

Siljamäki, Pia, Varmanen, Pekka, Kankainen, Matti, Sukura, Antti, Savijoki, Kirsi, Nyman, Tuula A.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.48 MB

english, 2014

44

An X-prolyl dipeptidyl aminopeptidase (pepX) gene from Lactobacillus helveticus

Vesanto, E., Savijoki, K., Rantanen, T., Steele, J. L., Palva, A.

Journal:

Microbiology (Society for General Microbiology)

Year:

1995

Language:

english

File:

PDF, 1.22 MB

english, 1995

45

Effect of heat-shock and bile salts on protein synthesis of Bifidobacterium longum revealed by [35S]methionine labelling and two-dimensional gel electrophoresis

Kirsi Savijoki, Aki Suokko, Airi Palva, Leena Valmu, Nisse Kalkkinen, Pekka Varmanen

Journal:

FEMS Microbiology Letters

Year:

2005

Language:

english

File:

PDF, 324 KB

english, 2005

46

X-Prolyl Dipeptidyl Aminopeptidase Gene (pepX) Is Part of the glnRA Operon in Lactobacillus rhamnosus

Varmanen, P., Savijoki, K., Avall, S., Palva, A., Tynkkynen, S.

Journal:

Journal of Bacteriology

Year:

2000

Language:

english

File:

PDF, 875 KB

english, 2000

47

Complete genome sequence ofPropionibacterium freudenreichiiDSM 20271T

Koskinen, Patrik, Deptula, Paulina, Smolander, Olli-Pekka, Tamene, Fitsum, Kammonen, Juhana, Savijoki, Kirsi, Paulin, Lars, Piironen, Vieno, Auvinen, Petri, Varmanen, Pekka

Journal:

Standards in Genomic Sciences

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

48

Growth Mode and Physiological State of Cells Prior to Biofilm Formation Affect Immune Evasion and Persistence of Staphylococcus aureus

Savijoki, Kirsi, Miettinen, Ilkka, Nyman, Tuula A., Kortesoja, Maarit, Hanski, Leena, Varmanen, Pekka, Fallarero, Adyary

Journal:

Year:

2020

File:

PDF, 3.32 MB

2020

49

Red-Brown Pigmentation of Acidipropionibacterium jensenii Is Tied to Haemolytic Activity and cyl-Like Gene Cluster

Deptula, Paulina, Loivamaa, Iida, Smolander, Olli-Pekka, Laine, Pia, Roberts, Richard J., Piironen, Vieno, Paulin, Lars, Savijoki, Kirsi, Auvinen, Petri, Varmanen, Pekka

Journal:

Year:

2019

Language:

english

File:

PDF, 2.34 MB

english, 2019

50

Structural and Functional Dynamics of Staphylococcus aureus Biofilms and Biofilm Matrix Proteins on Different Clinical Materials

Hiltunen,, Savijoki,, Nyman,, Miettinen,, Ihalainen,, Peltonen,, Fallarero,

Journal:

Year:

2019

File:

PDF, 1.59 MB

2019

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